miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 46677 0.66 0.65267
Target:  5'- ----gGCGAGCUCGgccugaGCCGCCGccGCg -3'
miRNA:   3'- ccuugCGCUCGGGCaa----CGGCGGCu-UG- -5'
23240 3' -57.5 NC_005259.1 + 46148 0.66 0.642061
Target:  5'- -uAGCGaCGAGCaugucgaauaCCGcUUGcCCGCCGGGCg -3'
miRNA:   3'- ccUUGC-GCUCG----------GGC-AAC-GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 45636 0.67 0.620828
Target:  5'- cGGGCaGCGcGCCgG-UGCCGCCguGAACa -3'
miRNA:   3'- cCUUG-CGCuCGGgCaACGGCGG--CUUG- -5'
23240 3' -57.5 NC_005259.1 + 45543 0.69 0.49635
Target:  5'- ---cUGCGAGCggGUUGCuCGCCGGGCc -3'
miRNA:   3'- ccuuGCGCUCGggCAACG-GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 45309 0.7 0.44772
Target:  5'- cGGuGACGcCGAGgCC---GCCGCCGAACu -3'
miRNA:   3'- -CC-UUGC-GCUCgGGcaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 45093 0.66 0.65267
Target:  5'- cGAGCGU--GCCCGUguaGCCgGUCGGGCc -3'
miRNA:   3'- cCUUGCGcuCGGGCAa--CGG-CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 44971 0.66 0.694834
Target:  5'- cGGGAUGCcgaGGGCCgGUgcgaCUGCCGAGg -3'
miRNA:   3'- -CCUUGCG---CUCGGgCAac--GGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 44320 0.71 0.367376
Target:  5'- cGAGCGUGuugagcGCCgCGUaGCUGCCGGGCu -3'
miRNA:   3'- cCUUGCGCu-----CGG-GCAaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43859 0.68 0.558649
Target:  5'- cGAGCGCacccgugacgacaccGGCagCGUUGCCGCCGAc- -3'
miRNA:   3'- cCUUGCGc--------------UCGg-GCAACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 43797 0.7 0.429018
Target:  5'- -cAGCGCGGGCaCCGaguccUUGCCgggcguaccGCCGGACa -3'
miRNA:   3'- ccUUGCGCUCG-GGC-----AACGG---------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43730 0.76 0.2047
Target:  5'- cGAugGCG-GCCa--UGCCGCCGAGCc -3'
miRNA:   3'- cCUugCGCuCGGgcaACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43202 0.67 0.610221
Target:  5'- cGGcGAUGuCGAcGCCCGccUGacCCGCCGAGCu -3'
miRNA:   3'- -CC-UUGC-GCU-CGGGCa-AC--GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43075 1.12 0.000534
Target:  5'- aGGAACGCGAGCCCGUUGCCGCCGAACa -3'
miRNA:   3'- -CCUUGCGCUCGGGCAACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43009 0.71 0.384357
Target:  5'- aGGGACGaGAacaaaCCGgcgaUGCCGCCGAGCa -3'
miRNA:   3'- -CCUUGCgCUcg---GGCa---ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 42968 0.67 0.631444
Target:  5'- cGAACGgGAuGCCggggaucauCGUUGCCgccccGCCGAACn -3'
miRNA:   3'- cCUUGCgCU-CGG---------GCAACGG-----CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 42808 0.66 0.692742
Target:  5'- -cGGCGCGuGCaCUGUgguauugcugccGCCGCCGAAa -3'
miRNA:   3'- ccUUGCGCuCG-GGCAa-----------CGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 41467 0.75 0.226683
Target:  5'- aGAA-GCG-GCCCGUgacGCCGUCGAGCa -3'
miRNA:   3'- cCUUgCGCuCGGGCAa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 41311 0.66 0.646306
Target:  5'- uGAGCGCGAGgUcgaccucgaaaagggCGgUGCCGUCGGAUa -3'
miRNA:   3'- cCUUGCGCUCgG---------------GCaACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 40557 0.66 0.67277
Target:  5'- -cGACGCGcGCCCGcgcggugUUGCUGUCGGcgGCu -3'
miRNA:   3'- ccUUGCGCuCGGGC-------AACGGCGGCU--UG- -5'
23240 3' -57.5 NC_005259.1 + 40314 0.71 0.384357
Target:  5'- cGAcacuCGUGAGCUCGaaaaGCUGCCGGACa -3'
miRNA:   3'- cCUu---GCGCUCGGGCaa--CGGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.