miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 3' -59.9 NC_005259.1 + 28212 0.66 0.598081
Target:  5'- uCCGuaGAcgGUCG-UGCCGCCaCCGUCg -3'
miRNA:   3'- -GGCccCUagUAGCaACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 59888 0.66 0.598081
Target:  5'- aCCGGGGGcgacgCGacUUGgUGCCgacacaguGCCCCGUCc -3'
miRNA:   3'- -GGCCCCUa----GU--AGCaACGG--------CGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 56391 0.66 0.598081
Target:  5'- gUCGGcuGAUCGUCucgauggUGcCCGgCCCGCCg -3'
miRNA:   3'- -GGCCc-CUAGUAGca-----AC-GGCgGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 36646 0.66 0.598081
Target:  5'- cCCGc-GAUCAgCGagccGCCGCCCuCGCCg -3'
miRNA:   3'- -GGCccCUAGUaGCaa--CGGCGGG-GCGG- -5'
23241 3' -59.9 NC_005259.1 + 45394 0.66 0.594992
Target:  5'- cUCGGGG-UCGcCGccgagcgcgcugaugGCCGCCgCCGCUg -3'
miRNA:   3'- -GGCCCCuAGUaGCaa-------------CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 44345 0.66 0.587794
Target:  5'- gCCGGGcuuguUCcacggcUCGUUGCCGaggCUCGCCa -3'
miRNA:   3'- -GGCCCcu---AGu-----AGCAACGGCg--GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 6189 0.66 0.587794
Target:  5'- aUGGGuGAUCugagcagCGUgagcggggugaGCCGCCgCGCCg -3'
miRNA:   3'- gGCCC-CUAGua-----GCAa----------CGGCGGgGCGG- -5'
23241 3' -59.9 NC_005259.1 + 12560 0.66 0.586766
Target:  5'- gCCGGGGuggCccgccagAUCcaUGCCGCCCCacGCg -3'
miRNA:   3'- -GGCCCCua-G-------UAGcaACGGCGGGG--CGg -5'
23241 3' -59.9 NC_005259.1 + 65878 0.66 0.577539
Target:  5'- gUGGGGcgGUCaAUCGgcggGaCgGUCCCGCCg -3'
miRNA:   3'- gGCCCC--UAG-UAGCaa--C-GgCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 38511 0.66 0.57447
Target:  5'- gCGGGc--CGcCGUUGUagagauagaacucgCGCCCCGCCg -3'
miRNA:   3'- gGCCCcuaGUaGCAACG--------------GCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 26304 0.66 0.573448
Target:  5'- aCGGGGAUCGacccauacauauccUCGggGUcgcacagauagcaCGCCCUcggGCCg -3'
miRNA:   3'- gGCCCCUAGU--------------AGCaaCG-------------GCGGGG---CGG- -5'
23241 3' -59.9 NC_005259.1 + 39889 0.66 0.567325
Target:  5'- aCCGa--AUCGUUGUcGCCGCcgCCCGCCu -3'
miRNA:   3'- -GGCcccUAGUAGCAaCGGCG--GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 23304 0.66 0.566306
Target:  5'- aUCGGGG-UCcggcgcgGUCGgUGUCGCCgaGCCg -3'
miRNA:   3'- -GGCCCCuAG-------UAGCaACGGCGGggCGG- -5'
23241 3' -59.9 NC_005259.1 + 33203 0.66 0.557157
Target:  5'- aCCauGGAUCAgcaCGUucuUGuuGCCgCCGCCg -3'
miRNA:   3'- -GGccCCUAGUa--GCA---ACggCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 42772 0.66 0.547042
Target:  5'- cUCGGcGGUC-UCGggGCCGCCaCCGaUCa -3'
miRNA:   3'- -GGCCcCUAGuAGCaaCGGCGG-GGC-GG- -5'
23241 3' -59.9 NC_005259.1 + 58726 0.66 0.547042
Target:  5'- gCCGGGGGU-GUCGUUGgcaCCGgCaCCGgCg -3'
miRNA:   3'- -GGCCCCUAgUAGCAAC---GGCgG-GGCgG- -5'
23241 3' -59.9 NC_005259.1 + 25902 0.67 0.536985
Target:  5'- uCCGaGGAUgGcCGccugaGCCGCCgCCGCCg -3'
miRNA:   3'- -GGCcCCUAgUaGCaa---CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 19239 0.67 0.535983
Target:  5'- gUCGGcGAUgAUCGaugGCCGCCugccgggCCGCCc -3'
miRNA:   3'- -GGCCcCUAgUAGCaa-CGGCGG-------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 36681 0.67 0.533981
Target:  5'- gCCGGGGucuugaccguccUCGcccgccgaugagcUCG-UGCCGCucgaCCCGCCg -3'
miRNA:   3'- -GGCCCCu-----------AGU-------------AGCaACGGCG----GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 45634 0.67 0.525999
Target:  5'- gCCGGGcaGcgCGcCGgUGCCGCCgugaacaCCGCCg -3'
miRNA:   3'- -GGCCC--CuaGUaGCaACGGCGG-------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.