miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 3' -59.9 NC_005259.1 + 42978 1.13 0.000302
Target:  5'- gCCGGGGAUCAUCGUUGCCGCCCCGCCg -3'
miRNA:   3'- -GGCCCCUAGUAGCAACGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 42772 0.66 0.547042
Target:  5'- cUCGGcGGUC-UCGggGCCGCCaCCGaUCa -3'
miRNA:   3'- -GGCCcCUAGuAGCaaCGGCGG-GGC-GG- -5'
23241 3' -59.9 NC_005259.1 + 41529 0.67 0.487783
Target:  5'- aCGGGGAaaagcUCGUCGUcgcaGUCGUCgcgagcguuacaCCGCCg -3'
miRNA:   3'- gGCCCCU-----AGUAGCAa---CGGCGG------------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 40148 0.69 0.422748
Target:  5'- gCCGucGGUUGUCGgUGcCCGCCCCGgCa -3'
miRNA:   3'- -GGCccCUAGUAGCaAC-GGCGGGGCgG- -5'
23241 3' -59.9 NC_005259.1 + 39889 0.66 0.567325
Target:  5'- aCCGa--AUCGUUGUcGCCGCcgCCCGCCu -3'
miRNA:   3'- -GGCcccUAGUAGCAaCGGCG--GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 38511 0.66 0.57447
Target:  5'- gCGGGc--CGcCGUUGUagagauagaacucgCGCCCCGCCg -3'
miRNA:   3'- gGCCCcuaGUaGCAACG--------------GCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 37626 0.68 0.435344
Target:  5'- aUGGGGAUgAUgugcugcccgaugacCGcaccGCCGCCgCCGCCg -3'
miRNA:   3'- gGCCCCUAgUA---------------GCaa--CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 37226 0.68 0.450001
Target:  5'- gCCGGGGcgCuggccCGUgccggauuggcUGCCGCCgUUGCCa -3'
miRNA:   3'- -GGCCCCuaGua---GCA-----------ACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 37019 0.7 0.339524
Target:  5'- gCCGGGGAaCAugacaaugUCGaucuuggUGcCCGCCaCCGCCc -3'
miRNA:   3'- -GGCCCCUaGU--------AGCa------AC-GGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 36681 0.67 0.533981
Target:  5'- gCCGGGGucuugaccguccUCGcccgccgaugagcUCG-UGCCGCucgaCCCGCCg -3'
miRNA:   3'- -GGCCCCu-----------AGU-------------AGCaACGGCG----GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 36646 0.66 0.598081
Target:  5'- cCCGc-GAUCAgCGagccGCCGCCCuCGCCg -3'
miRNA:   3'- -GGCccCUAGUaGCaa--CGGCGGG-GCGG- -5'
23241 3' -59.9 NC_005259.1 + 35498 0.75 0.181006
Target:  5'- uCCuGGGuuggCccCGUUGCCGCCgCCGCCg -3'
miRNA:   3'- -GGcCCCua--GuaGCAACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 33203 0.66 0.557157
Target:  5'- aCCauGGAUCAgcaCGUucuUGuuGCCgCCGCCg -3'
miRNA:   3'- -GGccCCUAGUa--GCA---ACggCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 31239 0.68 0.468697
Target:  5'- aCCauuGGGcgCggCGgUGCCGCCCCacacGCCg -3'
miRNA:   3'- -GGc--CCCuaGuaGCaACGGCGGGG----CGG- -5'
23241 3' -59.9 NC_005259.1 + 31098 0.71 0.288716
Target:  5'- gUCGGGGAUCAgucCGaugaGUCGCCCgauguCGCCg -3'
miRNA:   3'- -GGCCCCUAGUa--GCaa--CGGCGGG-----GCGG- -5'
23241 3' -59.9 NC_005259.1 + 28759 0.67 0.507227
Target:  5'- gCGuGaGAUCGUCGccggUGCCGacgagguaCCCGCCg -3'
miRNA:   3'- gGCcC-CUAGUAGCa---ACGGCg-------GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 28212 0.66 0.598081
Target:  5'- uCCGuaGAcgGUCG-UGCCGCCaCCGUCg -3'
miRNA:   3'- -GGCccCUagUAGCaACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 27478 0.68 0.431723
Target:  5'- gCCGGGG-UCggUGUggccaCCGCCCCacgcGCCg -3'
miRNA:   3'- -GGCCCCuAGuaGCAac---GGCGGGG----CGG- -5'
23241 3' -59.9 NC_005259.1 + 26408 0.67 0.507227
Target:  5'- gCCGGGcg-CggCGgUGCCGCCguagaacgcaCCGCCg -3'
miRNA:   3'- -GGCCCcuaGuaGCaACGGCGG----------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 26304 0.66 0.573448
Target:  5'- aCGGGGAUCGacccauacauauccUCGggGUcgcacagauagcaCGCCCUcggGCCg -3'
miRNA:   3'- gGCCCCUAGU--------------AGCaaCG-------------GCGGGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.