Results 1 - 20 of 135 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 62932 | 0.66 | 0.805818 |
Target: 5'- cGGuuuGC-GGCUcGCGcUGCUGCCGGGCa -3' miRNA: 3'- -UCu--UGuUUGGcCGCuACGGCGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 41008 | 0.66 | 0.756949 |
Target: 5'- uGGAuCGGGCCGGUccacaguguGGUGCCGCUGu-- -3' miRNA: 3'- -UCUuGUUUGGCCG---------CUACGGCGGCucg -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 31070 | 0.66 | 0.756949 |
Target: 5'- uGAuCGggUCGGCGAgGUUcCCGAGCg -3' miRNA: 3'- uCUuGUuuGGCCGCUaCGGcGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 43832 | 0.66 | 0.796356 |
Target: 5'- cGGACAcagGGCCGcCGcucGCCauGCCGAGCg -3' miRNA: 3'- uCUUGU---UUGGCcGCua-CGG--CGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 39762 | 0.66 | 0.805818 |
Target: 5'- cGGcAGCAGcggcagccugcuGCUGGUGAUcgGUgCGCCGAGCu -3' miRNA: 3'- -UC-UUGUU------------UGGCCGCUA--CG-GCGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 46676 | 0.66 | 0.767013 |
Target: 5'- -cGGCGAGCuCGGCcuGA-GCCGCCGccGCg -3' miRNA: 3'- ucUUGUUUG-GCCG--CUaCGGCGGCu-CG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 16407 | 0.66 | 0.756949 |
Target: 5'- gGGGACGcAGCCcaccgaGGUGcCCGUCGAGCg -3' miRNA: 3'- -UCUUGU-UUGGccg---CUAC-GGCGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 23865 | 0.66 | 0.785756 |
Target: 5'- -cGGCAcACCGaGUGGaugcgcuauccgcUGCCGCcCGAGCc -3' miRNA: 3'- ucUUGUuUGGC-CGCU-------------ACGGCG-GCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 23273 | 0.66 | 0.805818 |
Target: 5'- uGAGCAccaaGACCgGGCGcgGUgGuuGGGUa -3' miRNA: 3'- uCUUGU----UUGG-CCGCuaCGgCggCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 16101 | 0.66 | 0.776943 |
Target: 5'- uGGAGauguACCGGCGcggaAUGaCCGaCGAGCu -3' miRNA: 3'- -UCUUguu-UGGCCGC----UAC-GGCgGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 34900 | 0.66 | 0.767013 |
Target: 5'- cAGGACGGGCCGcuCGGgcaucacacUGCUGCCucGGGCg -3' miRNA: 3'- -UCUUGUUUGGCc-GCU---------ACGGCGG--CUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 45636 | 0.66 | 0.796356 |
Target: 5'- cGGGCAGcgcGCCGGU---GCCGCCGuGa -3' miRNA: 3'- uCUUGUU---UGGCCGcuaCGGCGGCuCg -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 40632 | 0.66 | 0.756949 |
Target: 5'- cGAACucgauGCCGuCGccgagaaagucAUGCuCGCCGAGCa -3' miRNA: 3'- uCUUGuu---UGGCcGC-----------UACG-GCGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 62858 | 0.66 | 0.776943 |
Target: 5'- cGAGCAGccGCuCGGCGcgagguagGCCGCUcggucauuGAGCg -3' miRNA: 3'- uCUUGUU--UG-GCCGCua------CGGCGG--------CUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 7851 | 0.66 | 0.80488 |
Target: 5'- cGGGACGGACCGcGCcgaccccGGUGgC-CCGAGUg -3' miRNA: 3'- -UCUUGUUUGGC-CG-------CUACgGcGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 43075 | 0.66 | 0.805818 |
Target: 5'- aGGAacGCGAGCCcGU--UGCCGCCGAa- -3' miRNA: 3'- -UCU--UGUUUGGcCGcuACGGCGGCUcg -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 40128 | 0.66 | 0.756949 |
Target: 5'- uGGAAUuGGCgGGCGAgcucGCCGUCGGu- -3' miRNA: 3'- -UCUUGuUUGgCCGCUa---CGGCGGCUcg -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 24014 | 0.66 | 0.805818 |
Target: 5'- gAGGACAccacggGGCUGGCGAaaUGgaaCCGCCGcaacgucgucGGCg -3' miRNA: 3'- -UCUUGU------UUGGCCGCU--AC---GGCGGC----------UCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 56301 | 0.66 | 0.794443 |
Target: 5'- cAGAcCAcguGGCCGGacccucgucGCCGUCGAGCa -3' miRNA: 3'- -UCUuGU---UUGGCCgcua-----CGGCGGCUCG- -5' |
|||||||
23241 | 5' | -55.1 | NC_005259.1 | + | 14715 | 0.66 | 0.767013 |
Target: 5'- cGAACAGcacGCCGcGCuc-GUCGCCGAGa -3' miRNA: 3'- uCUUGUU---UGGC-CGcuaCGGCGGCUCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home