miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 5' -55.1 NC_005259.1 + 728 0.76 0.250403
Target:  5'- gAGAAuCAcACCGGCGGUgccuacGCCGCCGGuGCc -3'
miRNA:   3'- -UCUU-GUuUGGCCGCUA------CGGCGGCU-CG- -5'
23241 5' -55.1 NC_005259.1 + 908 0.68 0.662117
Target:  5'- gAGGugGugcCCGGCGAucaccUGCUGCUGcGCg -3'
miRNA:   3'- -UCUugUuu-GGCCGCU-----ACGGCGGCuCG- -5'
23241 5' -55.1 NC_005259.1 + 1819 0.7 0.522804
Target:  5'- cGAGCAAucCCGcCGAccugcucgccgcUGCCGCCGAGg -3'
miRNA:   3'- uCUUGUUu-GGCcGCU------------ACGGCGGCUCg -5'
23241 5' -55.1 NC_005259.1 + 1884 0.69 0.586403
Target:  5'- -aAGCAGGCCGccgagaucgcGCGA-GCUGCCGAGg -3'
miRNA:   3'- ucUUGUUUGGC----------CGCUaCGGCGGCUCg -5'
23241 5' -55.1 NC_005259.1 + 2640 0.7 0.533243
Target:  5'- cGAACAAG--GGCGGUGUCG-CGGGCa -3'
miRNA:   3'- uCUUGUUUggCCGCUACGGCgGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 4292 0.7 0.522804
Target:  5'- cGAGCAcgGACCGGCGGccCUGCgaUGAGCg -3'
miRNA:   3'- uCUUGU--UUGGCCGCUacGGCG--GCUCG- -5'
23241 5' -55.1 NC_005259.1 + 5466 0.72 0.433073
Target:  5'- uGAGCAGcACCaauGGcCGGUGCaauagCGCCGAGCg -3'
miRNA:   3'- uCUUGUU-UGG---CC-GCUACG-----GCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 6055 0.7 0.522804
Target:  5'- cGAGCucguguGCgCGGUGAUcGCCGCCGAa- -3'
miRNA:   3'- uCUUGuu----UG-GCCGCUA-CGGCGGCUcg -5'
23241 5' -55.1 NC_005259.1 + 7175 0.68 0.684722
Target:  5'- gAGGGC--ACCGGCGAgUGCCcggccugcggacgcaCCGGGCu -3'
miRNA:   3'- -UCUUGuuUGGCCGCU-ACGGc--------------GGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 7386 0.68 0.69435
Target:  5'- cGGGACAGACCcGCGAgacCCGCaacGGCa -3'
miRNA:   3'- -UCUUGUUUGGcCGCUac-GGCGgc-UCG- -5'
23241 5' -55.1 NC_005259.1 + 7851 0.66 0.80488
Target:  5'- cGGGACGGACCGcGCcgaccccGGUGgC-CCGAGUg -3'
miRNA:   3'- -UCUUGUUUGGC-CG-------CUACgGcGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 8542 0.69 0.607981
Target:  5'- -cGAUGAGCuCGGCGGUGUagcccaugCGCCGcAGCa -3'
miRNA:   3'- ucUUGUUUG-GCCGCUACG--------GCGGC-UCG- -5'
23241 5' -55.1 NC_005259.1 + 10728 0.66 0.805818
Target:  5'- -cAugAugUCGGUGAUcaccgcgcGCUGCCGGGCg -3'
miRNA:   3'- ucUugUuuGGCCGCUA--------CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 11293 0.71 0.50217
Target:  5'- gAGGACGgucGACgGGCGugagGCCGagaCGGGCg -3'
miRNA:   3'- -UCUUGU---UUGgCCGCua--CGGCg--GCUCG- -5'
23241 5' -55.1 NC_005259.1 + 12207 0.67 0.704992
Target:  5'- uAGAGaugcACCGGCGcaccGCCcgcugGCCGGGCa -3'
miRNA:   3'- -UCUUguu-UGGCCGCua--CGG-----CGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 13225 0.66 0.805818
Target:  5'- uGGGCcucGACCGGCcaccGUGaggGCCGAGCa -3'
miRNA:   3'- uCUUGu--UUGGCCGc---UACgg-CGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 14203 0.67 0.704992
Target:  5'- cGAGCAGGCCGGgaucaacuaccCGgcGCgCGUCGuGCg -3'
miRNA:   3'- uCUUGUUUGGCC-----------GCuaCG-GCGGCuCG- -5'
23241 5' -55.1 NC_005259.1 + 14513 0.67 0.736461
Target:  5'- --uGCAcACCGGCGA-GCaCGCgGuGCg -3'
miRNA:   3'- ucuUGUuUGGCCGCUaCG-GCGgCuCG- -5'
23241 5' -55.1 NC_005259.1 + 14715 0.66 0.767013
Target:  5'- cGAACAGcacGCCGcGCuc-GUCGCCGAGa -3'
miRNA:   3'- uCUUGUU---UGGC-CGcuaCGGCGGCUCg -5'
23241 5' -55.1 NC_005259.1 + 14956 0.67 0.704992
Target:  5'- aAGGGC-GGCauggaGGCGcauucaagGCCGCCGGGUa -3'
miRNA:   3'- -UCUUGuUUGg----CCGCua------CGGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.