miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 5' -55.1 NC_005259.1 + 43015 1.13 0.000796
Target:  5'- gAGAACAAACCGGCGAUGCCGCCGAGCa -3'
miRNA:   3'- -UCUUGUUUGGCCGCUACGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 30936 0.88 0.040401
Target:  5'- cGGAAUGAGCaucuuGGCGAUGUCGCCGAGCa -3'
miRNA:   3'- -UCUUGUUUGg----CCGCUACGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 39051 0.8 0.147769
Target:  5'- cGGGAU--GuuGGCGAUGuuGCCGAGCu -3'
miRNA:   3'- -UCUUGuuUggCCGCUACggCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 37286 0.8 0.151834
Target:  5'- cAGGACuuGCaUGGCGGUGcCCGCCGGGUc -3'
miRNA:   3'- -UCUUGuuUG-GCCGCUAC-GGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 52575 0.77 0.214569
Target:  5'- cGAcCGGACCGGCcuGAgcGUCGCCGAGCa -3'
miRNA:   3'- uCUuGUUUGGCCG--CUa-CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 44459 0.77 0.22022
Target:  5'- ----gAGACCGGgGAUGCCGCCGcccuGGCc -3'
miRNA:   3'- ucuugUUUGGCCgCUACGGCGGC----UCG- -5'
23241 5' -55.1 NC_005259.1 + 46912 0.77 0.237938
Target:  5'- cGAGCAGuCCGcGUGc-GCCGCCGAGCu -3'
miRNA:   3'- uCUUGUUuGGC-CGCuaCGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 26447 0.76 0.244105
Target:  5'- cGGGCGGGCCGGUGG-GCCGauguggaaCGAGCa -3'
miRNA:   3'- uCUUGUUUGGCCGCUaCGGCg-------GCUCG- -5'
23241 5' -55.1 NC_005259.1 + 43238 0.76 0.244105
Target:  5'- uGAGCGAGCUGaCGAUGCCGCCc-GCg -3'
miRNA:   3'- uCUUGUUUGGCcGCUACGGCGGcuCG- -5'
23241 5' -55.1 NC_005259.1 + 47178 0.76 0.250403
Target:  5'- -cGGCGAAggUCGGCGGUGCCGUCG-GCg -3'
miRNA:   3'- ucUUGUUU--GGCCGCUACGGCGGCuCG- -5'
23241 5' -55.1 NC_005259.1 + 49370 0.76 0.250403
Target:  5'- uGAAgAGGCCGGUGAgaucguucuUGaCGCCGAGCg -3'
miRNA:   3'- uCUUgUUUGGCCGCU---------ACgGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 728 0.76 0.250403
Target:  5'- gAGAAuCAcACCGGCGGUgccuacGCCGCCGGuGCc -3'
miRNA:   3'- -UCUU-GUuUGGCCGCUA------CGGCGGCU-CG- -5'
23241 5' -55.1 NC_005259.1 + 26409 0.76 0.2634
Target:  5'- ---cCGGGCgCGGCGGUGCCGCCGuagaacGCa -3'
miRNA:   3'- ucuuGUUUG-GCCGCUACGGCGGCu-----CG- -5'
23241 5' -55.1 NC_005259.1 + 17494 0.76 0.276941
Target:  5'- cGGGCAAGgaCGGCGAccuUGCCGauCCGAGCu -3'
miRNA:   3'- uCUUGUUUg-GCCGCU---ACGGC--GGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 43725 0.76 0.276941
Target:  5'- cGAGuCGAuggCGGCcAUGCCGCCGAGCc -3'
miRNA:   3'- uCUU-GUUug-GCCGcUACGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 58572 0.75 0.291031
Target:  5'- uGGGcCGGAUcgCGGCGcgGCUGCCGGGCc -3'
miRNA:   3'- -UCUuGUUUG--GCCGCuaCGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 23306 0.75 0.298284
Target:  5'- cGGggUccGGCgCGGuCGGUGUCGCCGAGCc -3'
miRNA:   3'- -UCuuGu-UUG-GCC-GCUACGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 39982 0.75 0.313208
Target:  5'- cGAcCAccucGACgGGCuGAUcGCCGCCGAGCa -3'
miRNA:   3'- uCUuGU----UUGgCCG-CUA-CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 46835 0.74 0.336642
Target:  5'- uGAGCGccCCGGCGA-GCUGCcCGAGUc -3'
miRNA:   3'- uCUUGUuuGGCCGCUaCGGCG-GCUCG- -5'
23241 5' -55.1 NC_005259.1 + 51641 0.74 0.336642
Target:  5'- cGGAGCGGua-GGCGAacggguUGCCGCgCGGGCg -3'
miRNA:   3'- -UCUUGUUuggCCGCU------ACGGCG-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.