Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 42814 | 1.12 | 0.000515 |
Target: 5'- gUGCACUGUGGUAUUGCUGCCGCCGCCg -3' miRNA: 3'- -ACGUGACACCAUAACGACGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 38926 | 0.79 | 0.128439 |
Target: 5'- aGCAC-GUcGGUGUUGCugugcccggUGCCGCUGCCg -3' miRNA: 3'- aCGUGaCA-CCAUAACG---------ACGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 37397 | 0.75 | 0.219884 |
Target: 5'- cGCGCcGcccaUGGUGUUGUUGaCGCCGCCc -3' miRNA: 3'- aCGUGaC----ACCAUAACGACgGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 8649 | 0.74 | 0.261186 |
Target: 5'- gGCacgagGCUGUGGUcggGCUGCCacgcgggcaacgggGCCGCCu -3' miRNA: 3'- aCG-----UGACACCAuaaCGACGG--------------CGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 45412 | 0.74 | 0.283753 |
Target: 5'- cGCGCUGaUGGcc--GCcGCCGCUGCCu -3' miRNA: 3'- aCGUGAC-ACCauaaCGaCGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 26046 | 0.73 | 0.298166 |
Target: 5'- aGCGCcGccgGGUug-GCcaUGCCGCCGCCg -3' miRNA: 3'- aCGUGaCa--CCAuaaCG--ACGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 30701 | 0.73 | 0.305583 |
Target: 5'- aGCACgagcGUGUUGUUGCCGCCgacgcGCCg -3' miRNA: 3'- aCGUGacacCAUAACGACGGCGG-----CGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 33213 | 0.73 | 0.31314 |
Target: 5'- aGCACguuc---UUGUUGCCGCCGCCg -3' miRNA: 3'- aCGUGacaccauAACGACGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 37231 | 0.73 | 0.328677 |
Target: 5'- gGCGCUGgcccgugccGG-AUUgGCUGCCGCCGUUg -3' miRNA: 3'- aCGUGACa--------CCaUAA-CGACGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 37551 | 0.72 | 0.344777 |
Target: 5'- uUGCG-UGUGGUGUccgaugucgacUGCUcGCCGCCcgcGCCg -3' miRNA: 3'- -ACGUgACACCAUA-----------ACGA-CGGCGG---CGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 46218 | 0.72 | 0.360589 |
Target: 5'- cGCACUGaacgcauUGGUca-GCUcgGCUGCCGCCu -3' miRNA: 3'- aCGUGAC-------ACCAuaaCGA--CGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 40598 | 0.71 | 0.396397 |
Target: 5'- aGCACaucguUGUaGGUcugGCUGCCGUCGCg -3' miRNA: 3'- aCGUG-----ACA-CCAuaaCGACGGCGGCGg -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 45304 | 0.71 | 0.414675 |
Target: 5'- cGCGCc--GGUGacGCcgagGCCGCCGCCg -3' miRNA: 3'- aCGUGacaCCAUaaCGa---CGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 22584 | 0.71 | 0.418393 |
Target: 5'- aGUAC-GUGGUcgacgcgaucaaGCUGCaCGCCGCCg -3' miRNA: 3'- aCGUGaCACCAuaa---------CGACG-GCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 41941 | 0.71 | 0.424007 |
Target: 5'- cGuCGCU-UGGUugUGCUGCCGuCCGCUc -3' miRNA: 3'- aC-GUGAcACCAuaACGACGGC-GGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 25069 | 0.71 | 0.424007 |
Target: 5'- gGCAag--GGUGgcGCUGCCaCCGCCg -3' miRNA: 3'- aCGUgacaCCAUaaCGACGGcGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 44908 | 0.7 | 0.442077 |
Target: 5'- cGCGCUGUGG-------GCCGCCGCa -3' miRNA: 3'- aCGUGACACCauaacgaCGGCGGCGg -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 35495 | 0.7 | 0.451761 |
Target: 5'- cGaucCUG-GGUuggccccGUUGCcGCCGCCGCCg -3' miRNA: 3'- aCgu-GACaCCA-------UAACGaCGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 46861 | 0.69 | 0.502847 |
Target: 5'- -cCGCUGUcGGUcgagGCUugaaucgcGCCGCCGCCc -3' miRNA: 3'- acGUGACA-CCAuaa-CGA--------CGGCGGCGG- -5' |
|||||||
23242 | 5' | -56.3 | NC_005259.1 | + | 37617 | 0.69 | 0.512128 |
Target: 5'- aGCucGCUGaUGGggaugaugUGCUGCCcgaugaccgcaccGCCGCCg -3' miRNA: 3'- aCG--UGAC-ACCaua-----ACGACGG-------------CGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home