miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23242 5' -56.3 NC_005259.1 + 48381 0.66 0.706413
Target:  5'- cGCGuCUGUuGUcGUUGCcGCCGacgcCCGCCg -3'
miRNA:   3'- aCGU-GACAcCA-UAACGaCGGC----GGCGG- -5'
23242 5' -56.3 NC_005259.1 + 45304 0.71 0.414675
Target:  5'- cGCGCc--GGUGacGCcgagGCCGCCGCCg -3'
miRNA:   3'- aCGUGacaCCAUaaCGa---CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 22584 0.71 0.418393
Target:  5'- aGUAC-GUGGUcgacgcgaucaaGCUGCaCGCCGCCg -3'
miRNA:   3'- aCGUGaCACCAuaa---------CGACG-GCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 41941 0.71 0.424007
Target:  5'- cGuCGCU-UGGUugUGCUGCCGuCCGCUc -3'
miRNA:   3'- aC-GUGAcACCAuaACGACGGC-GGCGG- -5'
23242 5' -56.3 NC_005259.1 + 25069 0.71 0.424007
Target:  5'- gGCAag--GGUGgcGCUGCCaCCGCCg -3'
miRNA:   3'- aCGUgacaCCAUaaCGACGGcGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 44908 0.7 0.442077
Target:  5'- cGCGCUGUGG-------GCCGCCGCa -3'
miRNA:   3'- aCGUGACACCauaacgaCGGCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 35495 0.7 0.451761
Target:  5'- cGaucCUG-GGUuggccccGUUGCcGCCGCCGCCg -3'
miRNA:   3'- aCgu-GACaCCA-------UAACGaCGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 46861 0.69 0.502847
Target:  5'- -cCGCUGUcGGUcgagGCUugaaucgcGCCGCCGCCc -3'
miRNA:   3'- acGUGACA-CCAuaa-CGA--------CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 37617 0.69 0.512128
Target:  5'- aGCucGCUGaUGGggaugaugUGCUGCCcgaugaccgcaccGCCGCCg -3'
miRNA:   3'- aCG--UGAC-ACCaua-----ACGACGG-------------CGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 40598 0.71 0.396397
Target:  5'- aGCACaucguUGUaGGUcugGCUGCCGUCGCg -3'
miRNA:   3'- aCGUG-----ACA-CCAuaaCGACGGCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 46218 0.72 0.360589
Target:  5'- cGCACUGaacgcauUGGUca-GCUcgGCUGCCGCCu -3'
miRNA:   3'- aCGUGAC-------ACCAuaaCGA--CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 37551 0.72 0.344777
Target:  5'- uUGCG-UGUGGUGUccgaugucgacUGCUcGCCGCCcgcGCCg -3'
miRNA:   3'- -ACGUgACACCAUA-----------ACGA-CGGCGG---CGG- -5'
23242 5' -56.3 NC_005259.1 + 38926 0.79 0.128439
Target:  5'- aGCAC-GUcGGUGUUGCugugcccggUGCCGCUGCCg -3'
miRNA:   3'- aCGUGaCA-CCAUAACG---------ACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 37397 0.75 0.219884
Target:  5'- cGCGCcGcccaUGGUGUUGUUGaCGCCGCCc -3'
miRNA:   3'- aCGUGaC----ACCAUAACGACgGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 8649 0.74 0.261186
Target:  5'- gGCacgagGCUGUGGUcggGCUGCCacgcgggcaacgggGCCGCCu -3'
miRNA:   3'- aCG-----UGACACCAuaaCGACGG--------------CGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 45412 0.74 0.283753
Target:  5'- cGCGCUGaUGGcc--GCcGCCGCUGCCu -3'
miRNA:   3'- aCGUGAC-ACCauaaCGaCGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 26046 0.73 0.298166
Target:  5'- aGCGCcGccgGGUug-GCcaUGCCGCCGCCg -3'
miRNA:   3'- aCGUGaCa--CCAuaaCG--ACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 30701 0.73 0.305583
Target:  5'- aGCACgagcGUGUUGUUGCCGCCgacgcGCCg -3'
miRNA:   3'- aCGUGacacCAUAACGACGGCGG-----CGG- -5'
23242 5' -56.3 NC_005259.1 + 33213 0.73 0.31314
Target:  5'- aGCACguuc---UUGUUGCCGCCGCCg -3'
miRNA:   3'- aCGUGacaccauAACGACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 37231 0.73 0.328677
Target:  5'- gGCGCUGgcccgugccGG-AUUgGCUGCCGCCGUUg -3'
miRNA:   3'- aCGUGACa--------CCaUAA-CGACGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.