miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23242 5' -56.3 NC_005259.1 + 5415 0.68 0.572344
Target:  5'- cGCGCUGgccgccacgucgaGGUc-UGCgcccGCUGCCGCCg -3'
miRNA:   3'- aCGUGACa------------CCAuaACGa---CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 8649 0.74 0.261186
Target:  5'- gGCacgagGCUGUGGUcggGCUGCCacgcgggcaacgggGCCGCCu -3'
miRNA:   3'- aCG-----UGACACCAuaaCGACGG--------------CGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 12981 0.68 0.564838
Target:  5'- aGCGCccaccGUGGUGcucgcguucgcacUcgGCUacGCCGCCGCCc -3'
miRNA:   3'- aCGUGa----CACCAU-------------Aa-CGA--CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 17372 0.66 0.695742
Target:  5'- gGCGCUggucGUGGUcgacUGCgacaCUGCCGCCc -3'
miRNA:   3'- aCGUGA----CACCAua--ACGac--GGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 18651 0.66 0.681781
Target:  5'- cGCAUUGgcgcgaua-UGCCGCCGCCc -3'
miRNA:   3'- aCGUGACaccauaacgACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 20128 0.66 0.683934
Target:  5'- cGCACUG-------GCUGCCGUCGCg -3'
miRNA:   3'- aCGUGACaccauaaCGACGGCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 22584 0.71 0.418393
Target:  5'- aGUAC-GUGGUcgacgcgaucaaGCUGCaCGCCGCCg -3'
miRNA:   3'- aCGUGaCACCAuaa---------CGACG-GCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 23866 0.67 0.641695
Target:  5'- gGCACaccgaGUGGaugcgcUAUccGCUGCCGCCcgaGCCg -3'
miRNA:   3'- aCGUGa----CACC------AUAa-CGACGGCGG---CGG- -5'
23242 5' -56.3 NC_005259.1 + 25069 0.71 0.424007
Target:  5'- gGCAag--GGUGgcGCUGCCaCCGCCg -3'
miRNA:   3'- aCGUgacaCCAUaaCGACGGcGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 26046 0.73 0.298166
Target:  5'- aGCGCcGccgGGUug-GCcaUGCCGCCGCCg -3'
miRNA:   3'- aCGUGaCa--CCAuaaCG--ACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 26174 0.66 0.694671
Target:  5'- cGCGucCUGUGcgaucuccagaauGUGcgGCagcaugGCCGCCGCCg -3'
miRNA:   3'- aCGU--GACAC-------------CAUaaCGa-----CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 27145 0.67 0.641695
Target:  5'- gGCgGCUGcGGUGUUGggGCCaacgauGCCGUCg -3'
miRNA:   3'- aCG-UGACaCCAUAACgaCGG------CGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 30701 0.73 0.305583
Target:  5'- aGCACgagcGUGUUGUUGCCGCCgacgcGCCg -3'
miRNA:   3'- aCGUGacacCAUAACGACGGCGG-----CGG- -5'
23242 5' -56.3 NC_005259.1 + 33112 0.67 0.652562
Target:  5'- gUGC-CUGUaGGgccacgcgGCaGCCGCCGCg -3'
miRNA:   3'- -ACGuGACA-CCauaa----CGaCGGCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 33213 0.73 0.31314
Target:  5'- aGCACguuc---UUGUUGCCGCCGCCg -3'
miRNA:   3'- aCGUGacaccauAACGACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 35495 0.7 0.451761
Target:  5'- cGaucCUG-GGUuggccccGUUGCcGCCGCCGCCg -3'
miRNA:   3'- aCgu-GACaCCA-------UAACGaCGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 35670 0.66 0.706413
Target:  5'- aGCGCgGUGGUggUGCacaGCgaCGCCGUg -3'
miRNA:   3'- aCGUGaCACCAuaACGa--CG--GCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 36820 0.66 0.706413
Target:  5'- gGCGCgGUGagacccacgguuGUGcacgUGCUGaCGCCGCCc -3'
miRNA:   3'- aCGUGaCAC------------CAUa---ACGACgGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 37231 0.73 0.328677
Target:  5'- gGCGCUGgcccgugccGG-AUUgGCUGCCGCCGUUg -3'
miRNA:   3'- aCGUGACa--------CCaUAA-CGACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 37397 0.75 0.219884
Target:  5'- cGCGCcGcccaUGGUGUUGUUGaCGCCGCCc -3'
miRNA:   3'- aCGUGaC----ACCAUAACGACgGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.