Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23244 | 3' | -61 | NC_005259.1 | + | 42672 | 0.66 | 0.541733 |
Target: 5'- gGCUGcUgUUGGCgAUCUCGACC-CCg -3' miRNA: 3'- gCGGCaGgGGCCGgUAGAGCUGGuGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 48472 | 0.66 | 0.541733 |
Target: 5'- gCGCCGggucgCgUCGGCCuguucCUCGACgCGCUu -3' miRNA: 3'- -GCGGCa----GgGGCCGGua---GAGCUG-GUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 30659 | 0.66 | 0.540733 |
Target: 5'- aGCCGcagcacaUCgCCCGGCgAguagCU-GGCCACCu -3' miRNA: 3'- gCGGC-------AG-GGGCCGgUa---GAgCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 13506 | 0.66 | 0.535744 |
Target: 5'- -cUCG-CCCCGGUCuGUCggucaccgagacugCGGCCACCa -3' miRNA: 3'- gcGGCaGGGGCCGG-UAGa-------------GCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 22444 | 0.66 | 0.531764 |
Target: 5'- gGCCaucgaCUCUGGCUAcCUCGugCGCCc -3' miRNA: 3'- gCGGca---GGGGCCGGUaGAGCugGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 45822 | 0.66 | 0.531764 |
Target: 5'- aGCCGgggaugaCCauGCCGUC-CGcACCACCg -3' miRNA: 3'- gCGGCag-----GGgcCGGUAGaGC-UGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 58169 | 0.66 | 0.531764 |
Target: 5'- gCGCaCGggaUCUCGacGCaCGUCUUGACCGCCg -3' miRNA: 3'- -GCG-GCa--GGGGC--CG-GUAGAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 37257 | 0.66 | 0.521862 |
Target: 5'- cCGCCGUUgCCaGGCUuga--GGCCGCCc -3' miRNA: 3'- -GCGGCAGgGG-CCGGuagagCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 30617 | 0.66 | 0.521862 |
Target: 5'- uCGCCGUUUCUGGUgAUCgagUGAaugUCGCCg -3' miRNA: 3'- -GCGGCAGGGGCCGgUAGa--GCU---GGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 60132 | 0.66 | 0.521862 |
Target: 5'- gGCCucGUCCUgcgCGGCC---UUGGCCGCCg -3' miRNA: 3'- gCGG--CAGGG---GCCGGuagAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 61918 | 0.66 | 0.515956 |
Target: 5'- gGUCGUCgUCGGCagcucgGUCUCucgcgcgggugccggGGCCACCg -3' miRNA: 3'- gCGGCAGgGGCCGg-----UAGAG---------------CUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 3296 | 0.66 | 0.512033 |
Target: 5'- uCGCCgGUCCCuCGGCgagcgcugCGUCgacgUGAgCGCCg -3' miRNA: 3'- -GCGG-CAGGG-GCCG--------GUAGa---GCUgGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 9714 | 0.66 | 0.512033 |
Target: 5'- -aCCGUCCUCgGGCCGg-UCGAgcUCGCCg -3' miRNA: 3'- gcGGCAGGGG-CCGGUagAGCU--GGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 17243 | 0.66 | 0.506172 |
Target: 5'- aGCCgGUCUcacgCUGGCCAccucagacaaggcagUgCUCGACCGCUa -3' miRNA: 3'- gCGG-CAGG----GGCCGGU---------------A-GAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 5087 | 0.66 | 0.502281 |
Target: 5'- gGCCGgugUCaCCGGCgAUCUgcguaGACCGCg -3' miRNA: 3'- gCGGCa--GG-GGCCGgUAGAg----CUGGUGg -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 60278 | 0.66 | 0.502281 |
Target: 5'- gCGCUG-CCgggCGGCCAUCgucgucggugCGGCCACg -3' miRNA: 3'- -GCGGCaGGg--GCCGGUAGa---------GCUGGUGg -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 19267 | 0.66 | 0.502281 |
Target: 5'- gGCCG-CCCgaUGGaaGUCaUGACCACCa -3' miRNA: 3'- gCGGCaGGG--GCCggUAGaGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 56717 | 0.66 | 0.502281 |
Target: 5'- uGgUGUCCCCGaGCgCGUCgaCGuauCCGCCa -3' miRNA: 3'- gCgGCAGGGGC-CG-GUAGa-GCu--GGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 9590 | 0.66 | 0.492611 |
Target: 5'- aCGUCGUCggUCUGGCCGUa--GAgCACCg -3' miRNA: 3'- -GCGGCAG--GGGCCGGUAgagCUgGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 57978 | 0.66 | 0.492611 |
Target: 5'- uCGCCGggaucgugaCCCCGGUCGagccagCGACCAUg -3' miRNA: 3'- -GCGGCa--------GGGGCCGGUaga---GCUGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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