Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23244 | 3' | -61 | NC_005259.1 | + | 42227 | 1.11 | 0.000347 |
Target: 5'- cCGCCGUCCCCGGCCAUCUCGACCACCu -3' miRNA: 3'- -GCGGCAGGGGCCGGUAGAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 67757 | 0.84 | 0.031673 |
Target: 5'- gGCCG-CCCCGGCCA-C-CGGCCACCg -3' miRNA: 3'- gCGGCaGGGGCCGGUaGaGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 48143 | 0.79 | 0.07255 |
Target: 5'- cCGCCG-CCCCGGCCAccacCUCGcccgaaaccgcccccGCCGCCg -3' miRNA: 3'- -GCGGCaGGGGCCGGUa---GAGC---------------UGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 63181 | 0.78 | 0.084318 |
Target: 5'- cCGCCGaggugaucgcaCCCCGGUCGUgcgcCUCGACCGCCu -3' miRNA: 3'- -GCGGCa----------GGGGCCGGUA----GAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 20725 | 0.78 | 0.0899 |
Target: 5'- cCGCCGcgCgaaaugacguauuggUCCGGCCAUCcCGACCACCg -3' miRNA: 3'- -GCGGCa-G---------------GGGCCGGUAGaGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 24483 | 0.77 | 0.109978 |
Target: 5'- aGCuCGUCCUCGGCgAUgUCaaGACCACCa -3' miRNA: 3'- gCG-GCAGGGGCCGgUAgAG--CUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 13102 | 0.77 | 0.107114 |
Target: 5'- -aCCGaCCCCGGCCcgCUCGGCgGCUa -3' miRNA: 3'- gcGGCaGGGGCCGGuaGAGCUGgUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 20155 | 0.75 | 0.139167 |
Target: 5'- aGCCGgugCCCUGGCCAcCgCGcCCGCCg -3' miRNA: 3'- gCGGCa--GGGGCCGGUaGaGCuGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 37426 | 0.72 | 0.242137 |
Target: 5'- cCGCCGUgCCauuGGCCAUCggGACaUACCa -3' miRNA: 3'- -GCGGCAgGGg--CCGGUAGagCUG-GUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 53155 | 0.72 | 0.242137 |
Target: 5'- aGCCGcuacgCCgaGGCCgAUCUCG-CCACCg -3' miRNA: 3'- gCGGCa----GGggCCGG-UAGAGCuGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 6579 | 0.72 | 0.23062 |
Target: 5'- gGCCG-CCUCGGaCAaauggCUCGACUACCg -3' miRNA: 3'- gCGGCaGGGGCCgGUa----GAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 66737 | 0.72 | 0.225037 |
Target: 5'- aCGCgGUCaggcugaugcugCCCGGCCugccagUCGACCGCCu -3' miRNA: 3'- -GCGgCAG------------GGGCCGGuag---AGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 48398 | 0.72 | 0.214215 |
Target: 5'- cCGCCGaCgCCC-GCCGUCgagucaccgCGACCGCCa -3' miRNA: 3'- -GCGGCaG-GGGcCGGUAGa--------GCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 66630 | 0.72 | 0.214215 |
Target: 5'- -cUCGUCCCUGGCCAccgCUCGgauuGCUGCCg -3' miRNA: 3'- gcGGCAGGGGCCGGUa--GAGC----UGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 57669 | 0.71 | 0.266604 |
Target: 5'- uCGaCCGUgUCCGGCCAa-UCGACCgugGCCa -3' miRNA: 3'- -GC-GGCAgGGGCCGGUagAGCUGG---UGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 15541 | 0.71 | 0.260305 |
Target: 5'- cCGCCGUCaCUGGCCGgugccacccUCaggUGGCCACCc -3' miRNA: 3'- -GCGGCAGgGGCCGGU---------AGa--GCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 40163 | 0.71 | 0.254128 |
Target: 5'- uGcCCG-CCCCGGCag-CUCGACCGUCa -3' miRNA: 3'- gC-GGCaGGGGCCGguaGAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 56375 | 0.71 | 0.253517 |
Target: 5'- aGCCGUCgCgGGCCGcgucggcugaucgUCUCGAuggugcccggcCCGCCg -3' miRNA: 3'- gCGGCAGgGgCCGGU-------------AGAGCU-----------GGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 39940 | 0.7 | 0.304162 |
Target: 5'- gGUCGUCCUuggugacgaacuUGGUCAggcugagcgacugCUCGACCACCu -3' miRNA: 3'- gCGGCAGGG------------GCCGGUa------------GAGCUGGUGG- -5' |
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23244 | 3' | -61 | NC_005259.1 | + | 25947 | 0.7 | 0.306995 |
Target: 5'- aCGCCgGUgCCCGGCCcgC-CGA-CGCCu -3' miRNA: 3'- -GCGG-CAgGGGCCGGuaGaGCUgGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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