Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23246 | 3' | -61 | NC_005259.1 | + | 40283 | 1.08 | 0.000428 |
Target: 5'- aCACUCACCGCGCCCUGCCGACGCUCAa -3' miRNA: 3'- -GUGAGUGGCGCGGGACGGCUGCGAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 37161 | 0.8 | 0.058771 |
Target: 5'- uCAC-CGCCGCGCCC-GCCGACGC-CGc -3' miRNA: 3'- -GUGaGUGGCGCGGGaCGGCUGCGaGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 5514 | 0.75 | 0.119234 |
Target: 5'- aCGCgCGCCGCGCCCgcaaGCUGugGCUg- -3' miRNA: 3'- -GUGaGUGGCGCGGGa---CGGCugCGAgu -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 5207 | 0.74 | 0.148929 |
Target: 5'- aGCUCACCGCGCUCgccgagcaauaccCCGACGCUgAg -3' miRNA: 3'- gUGAGUGGCGCGGGac-----------GGCUGCGAgU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 57516 | 0.74 | 0.15129 |
Target: 5'- gACUCACCGCaGCgCUUGCCGACGgcgauggcgucCUCGg -3' miRNA: 3'- gUGAGUGGCG-CG-GGACGGCUGC-----------GAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 25339 | 0.73 | 0.167915 |
Target: 5'- cCGCUCACUGUGCCCgaGCCGggaACGC-CGa -3' miRNA: 3'- -GUGAGUGGCGCGGGa-CGGC---UGCGaGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 53217 | 0.72 | 0.190986 |
Target: 5'- uCGCgUCGcCCGCGCCCUGCuUGAgGUUCGc -3' miRNA: 3'- -GUG-AGU-GGCGCGGGACG-GCUgCGAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 10741 | 0.72 | 0.211402 |
Target: 5'- --aUCACCGCGCgCUGCCgGGCGaUCAu -3' miRNA: 3'- gugAGUGGCGCGgGACGG-CUGCgAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 20167 | 0.71 | 0.233669 |
Target: 5'- gGC-CACCGCGCCCgccgccucgGCUGACGagaUCGc -3' miRNA: 3'- gUGaGUGGCGCGGGa--------CGGCUGCg--AGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 44727 | 0.7 | 0.251021 |
Target: 5'- gCACccggCAgCGCGCCCUcgaccgcGCCGAgGCUCu -3' miRNA: 3'- -GUGa---GUgGCGCGGGA-------CGGCUgCGAGu -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 1368 | 0.7 | 0.251638 |
Target: 5'- cCGCUCGCCGCgccGCCCgcgagGCCcGCGCa-- -3' miRNA: 3'- -GUGAGUGGCG---CGGGa----CGGcUGCGagu -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 60549 | 0.7 | 0.284094 |
Target: 5'- cCGCUCGuCgGCauGCCCggUGCCGACGgUCAg -3' miRNA: 3'- -GUGAGU-GgCG--CGGG--ACGGCUGCgAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 44845 | 0.7 | 0.284094 |
Target: 5'- ---aCACCGCGCCCgaGCaGuCGCUCAg -3' miRNA: 3'- gugaGUGGCGCGGGa-CGgCuGCGAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 40143 | 0.69 | 0.30511 |
Target: 5'- aGCUCGCCGUcgguugucgguGCCCgccCCGGCaGCUCGa -3' miRNA: 3'- gUGAGUGGCG-----------CGGGac-GGCUG-CGAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 17555 | 0.69 | 0.309453 |
Target: 5'- cUACuUCACCGUGCCCgacgagauccucCCGACGCUg- -3' miRNA: 3'- -GUG-AGUGGCGCGGGac----------GGCUGCGAgu -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 29147 | 0.69 | 0.319771 |
Target: 5'- uCGCUCACCGCGCUCgGCUGGacCGUc-- -3' miRNA: 3'- -GUGAGUGGCGCGGGaCGGCU--GCGagu -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 19532 | 0.69 | 0.319771 |
Target: 5'- uCAC-CGCCGUGCag-GCCGACGCg-- -3' miRNA: 3'- -GUGaGUGGCGCGggaCGGCUGCGagu -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 43281 | 0.69 | 0.319771 |
Target: 5'- gAC-CGCaGCGCCCgccGCCGACGCg-- -3' miRNA: 3'- gUGaGUGgCGCGGGa--CGGCUGCGagu -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 13473 | 0.69 | 0.327298 |
Target: 5'- uGCUCACCGCGCUgc-CCGACGauguCUCGg -3' miRNA: 3'- gUGAGUGGCGCGGgacGGCUGC----GAGU- -5' |
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23246 | 3' | -61 | NC_005259.1 | + | 48069 | 0.69 | 0.334955 |
Target: 5'- gCGC-CGCCGCGCCCUGagCGAUGgUg- -3' miRNA: 3'- -GUGaGUGGCGCGGGACg-GCUGCgAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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