miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23246 3' -61 NC_005259.1 + 846 0.66 0.49384
Target:  5'- aGgUCGCUGCGCag-GCCGagugcgagcguGCGCUCAa -3'
miRNA:   3'- gUgAGUGGCGCGggaCGGC-----------UGCGAGU- -5'
23246 3' -61 NC_005259.1 + 1368 0.7 0.251638
Target:  5'- cCGCUCGCCGCgccGCCCgcgagGCCcGCGCa-- -3'
miRNA:   3'- -GUGAGUGGCG---CGGGa----CGGcUGCGagu -5'
23246 3' -61 NC_005259.1 + 1837 0.67 0.427582
Target:  5'- uGCUCGCCGCuGCC--GCCGAgGC-CGa -3'
miRNA:   3'- gUGAGUGGCG-CGGgaCGGCUgCGaGU- -5'
23246 3' -61 NC_005259.1 + 1919 0.67 0.427582
Target:  5'- aGCgCGCCGC-CCCaaaaUGCCGACGgUCc -3'
miRNA:   3'- gUGaGUGGCGcGGG----ACGGCUGCgAGu -5'
23246 3' -61 NC_005259.1 + 4649 0.66 0.481163
Target:  5'- cCGCgCACCGCGCCuacgggcacgguguCUgcacuggcucggGCCGACaGCUCGg -3'
miRNA:   3'- -GUGaGUGGCGCGG--------------GA------------CGGCUG-CGAGU- -5'
23246 3' -61 NC_005259.1 + 5207 0.74 0.148929
Target:  5'- aGCUCACCGCGCUCgccgagcaauaccCCGACGCUgAg -3'
miRNA:   3'- gUGAGUGGCGCGGGac-----------GGCUGCGAgU- -5'
23246 3' -61 NC_005259.1 + 5514 0.75 0.119234
Target:  5'- aCGCgCGCCGCGCCCgcaaGCUGugGCUg- -3'
miRNA:   3'- -GUGaGUGGCGCGGGa---CGGCugCGAgu -5'
23246 3' -61 NC_005259.1 + 6464 0.68 0.350659
Target:  5'- aGCgUCGCCgGUGCCCUGUaccCGCUCAc -3'
miRNA:   3'- gUG-AGUGG-CGCGGGACGgcuGCGAGU- -5'
23246 3' -61 NC_005259.1 + 6928 0.66 0.484075
Target:  5'- aAC-CGCCGcCGCCUugagGCCGA-GCUCGc -3'
miRNA:   3'- gUGaGUGGC-GCGGGa---CGGCUgCGAGU- -5'
23246 3' -61 NC_005259.1 + 9701 0.66 0.464828
Target:  5'- cCGCUCACUGgGCaCCguccucggGCCGGucgaGCUCGc -3'
miRNA:   3'- -GUGAGUGGCgCG-GGa-------CGGCUg---CGAGU- -5'
23246 3' -61 NC_005259.1 + 10741 0.72 0.211402
Target:  5'- --aUCACCGCGCgCUGCCgGGCGaUCAu -3'
miRNA:   3'- gugAGUGGCGCGgGACGG-CUGCgAGU- -5'
23246 3' -61 NC_005259.1 + 11198 0.67 0.418549
Target:  5'- gCAgUCACCGCaCCCuuUGCCGuCGCa-- -3'
miRNA:   3'- -GUgAGUGGCGcGGG--ACGGCuGCGagu -5'
23246 3' -61 NC_005259.1 + 13473 0.69 0.327298
Target:  5'- uGCUCACCGCGCUgc-CCGACGauguCUCGg -3'
miRNA:   3'- gUGAGUGGCGCGGgacGGCUGC----GAGU- -5'
23246 3' -61 NC_005259.1 + 14328 0.66 0.464828
Target:  5'- ---aCGCCGcCGCCCgcgugcgggccGCCGACGCcaUCAa -3'
miRNA:   3'- gugaGUGGC-GCGGGa----------CGGCUGCG--AGU- -5'
23246 3' -61 NC_005259.1 + 16718 0.68 0.383608
Target:  5'- aGCagGUCGCGCUCUGCCucgccACGCUCAa -3'
miRNA:   3'- gUGagUGGCGCGGGACGGc----UGCGAGU- -5'
23246 3' -61 NC_005259.1 + 17555 0.69 0.309453
Target:  5'- cUACuUCACCGUGCCCgacgagauccucCCGACGCUg- -3'
miRNA:   3'- -GUG-AGUGGCGCGGGac----------GGCUGCGAgu -5'
23246 3' -61 NC_005259.1 + 17762 0.68 0.350659
Target:  5'- gGC-CGCCGCGCgCCggGCCGAgCGCa-- -3'
miRNA:   3'- gUGaGUGGCGCG-GGa-CGGCU-GCGagu -5'
23246 3' -61 NC_005259.1 + 19532 0.69 0.319771
Target:  5'- uCAC-CGCCGUGCag-GCCGACGCg-- -3'
miRNA:   3'- -GUGaGUGGCGCGggaCGGCUGCGagu -5'
23246 3' -61 NC_005259.1 + 19852 0.68 0.342742
Target:  5'- gCGCUCGguguggcgcUCGCGCCCgccgggaucGCCGACGC-CGc -3'
miRNA:   3'- -GUGAGU---------GGCGCGGGa--------CGGCUGCGaGU- -5'
23246 3' -61 NC_005259.1 + 20167 0.71 0.233669
Target:  5'- gGC-CACCGCGCCCgccgccucgGCUGACGagaUCGc -3'
miRNA:   3'- gUGaGUGGCGCGGGa--------CGGCUGCg--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.