miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23246 3' -61 NC_005259.1 + 846 0.66 0.49384
Target:  5'- aGgUCGCUGCGCag-GCCGagugcgagcguGCGCUCAa -3'
miRNA:   3'- gUgAGUGGCGCGggaCGGC-----------UGCGAGU- -5'
23246 3' -61 NC_005259.1 + 44845 0.7 0.284094
Target:  5'- ---aCACCGCGCCCgaGCaGuCGCUCAg -3'
miRNA:   3'- gugaGUGGCGCGGGa-CGgCuGCGAGU- -5'
23246 3' -61 NC_005259.1 + 40143 0.69 0.30511
Target:  5'- aGCUCGCCGUcgguugucgguGCCCgccCCGGCaGCUCGa -3'
miRNA:   3'- gUGAGUGGCG-----------CGGGac-GGCUG-CGAGU- -5'
23246 3' -61 NC_005259.1 + 17555 0.69 0.309453
Target:  5'- cUACuUCACCGUGCCCgacgagauccucCCGACGCUg- -3'
miRNA:   3'- -GUG-AGUGGCGCGGGac----------GGCUGCGAgu -5'
23246 3' -61 NC_005259.1 + 43281 0.69 0.319771
Target:  5'- gAC-CGCaGCGCCCgccGCCGACGCg-- -3'
miRNA:   3'- gUGaGUGgCGCGGGa--CGGCUGCGagu -5'
23246 3' -61 NC_005259.1 + 19532 0.69 0.319771
Target:  5'- uCAC-CGCCGUGCag-GCCGACGCg-- -3'
miRNA:   3'- -GUGaGUGGCGCGggaCGGCUGCGagu -5'
23246 3' -61 NC_005259.1 + 29147 0.69 0.319771
Target:  5'- uCGCUCACCGCGCUCgGCUGGacCGUc-- -3'
miRNA:   3'- -GUGAGUGGCGCGGGaCGGCU--GCGagu -5'
23246 3' -61 NC_005259.1 + 13473 0.69 0.327298
Target:  5'- uGCUCACCGCGCUgc-CCGACGauguCUCGg -3'
miRNA:   3'- gUGAGUGGCGCGGgacGGCUGC----GAGU- -5'
23246 3' -61 NC_005259.1 + 48069 0.69 0.334955
Target:  5'- gCGC-CGCCGCGCCCUGagCGAUGgUg- -3'
miRNA:   3'- -GUGaGUGGCGCGGGACg-GCUGCgAgu -5'
23246 3' -61 NC_005259.1 + 60549 0.7 0.284094
Target:  5'- cCGCUCGuCgGCauGCCCggUGCCGACGgUCAg -3'
miRNA:   3'- -GUGAGU-GgCG--CGGG--ACGGCUGCgAGU- -5'
23246 3' -61 NC_005259.1 + 1368 0.7 0.251638
Target:  5'- cCGCUCGCCGCgccGCCCgcgagGCCcGCGCa-- -3'
miRNA:   3'- -GUGAGUGGCG---CGGGa----CGGcUGCGagu -5'
23246 3' -61 NC_005259.1 + 44727 0.7 0.251021
Target:  5'- gCACccggCAgCGCGCCCUcgaccgcGCCGAgGCUCu -3'
miRNA:   3'- -GUGa---GUgGCGCGGGA-------CGGCUgCGAGu -5'
23246 3' -61 NC_005259.1 + 37161 0.8 0.058771
Target:  5'- uCAC-CGCCGCGCCC-GCCGACGC-CGc -3'
miRNA:   3'- -GUGaGUGGCGCGGGaCGGCUGCGaGU- -5'
23246 3' -61 NC_005259.1 + 5514 0.75 0.119234
Target:  5'- aCGCgCGCCGCGCCCgcaaGCUGugGCUg- -3'
miRNA:   3'- -GUGaGUGGCGCGGGa---CGGCugCGAgu -5'
23246 3' -61 NC_005259.1 + 5207 0.74 0.148929
Target:  5'- aGCUCACCGCGCUCgccgagcaauaccCCGACGCUgAg -3'
miRNA:   3'- gUGAGUGGCGCGGGac-----------GGCUGCGAgU- -5'
23246 3' -61 NC_005259.1 + 57516 0.74 0.15129
Target:  5'- gACUCACCGCaGCgCUUGCCGACGgcgauggcgucCUCGg -3'
miRNA:   3'- gUGAGUGGCG-CG-GGACGGCUGC-----------GAGU- -5'
23246 3' -61 NC_005259.1 + 25339 0.73 0.167915
Target:  5'- cCGCUCACUGUGCCCgaGCCGggaACGC-CGa -3'
miRNA:   3'- -GUGAGUGGCGCGGGa-CGGC---UGCGaGU- -5'
23246 3' -61 NC_005259.1 + 53217 0.72 0.190986
Target:  5'- uCGCgUCGcCCGCGCCCUGCuUGAgGUUCGc -3'
miRNA:   3'- -GUG-AGU-GGCGCGGGACG-GCUgCGAGU- -5'
23246 3' -61 NC_005259.1 + 10741 0.72 0.211402
Target:  5'- --aUCACCGCGCgCUGCCgGGCGaUCAu -3'
miRNA:   3'- gugAGUGGCGCGgGACGG-CUGCgAGU- -5'
23246 3' -61 NC_005259.1 + 20167 0.71 0.233669
Target:  5'- gGC-CACCGCGCCCgccgccucgGCUGACGagaUCGc -3'
miRNA:   3'- gUGaGUGGCGCGGGa--------CGGCUGCg--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.