miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23247 3' -57.2 NC_005259.1 + 26254 0.71 0.39622
Target:  5'- cCAugUCGuagacggucuCCAUGAUGUcGCCGGuGCCg -3'
miRNA:   3'- aGUugAGCu---------GGUGCUGCA-CGGCC-CGG- -5'
23247 3' -57.2 NC_005259.1 + 61048 0.71 0.39622
Target:  5'- cCGACgggCGGCuCACcuUGUGCCGGGCa -3'
miRNA:   3'- aGUUGa--GCUG-GUGcuGCACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 3055 0.71 0.413966
Target:  5'- cCGACUacuACCGuCGACGgGCCGaGGCCg -3'
miRNA:   3'- aGUUGAgc-UGGU-GCUGCaCGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 4695 0.71 0.432194
Target:  5'- aCAGCUCGGCCcCGugGUGCgaugacCGcGCCc -3'
miRNA:   3'- aGUUGAGCUGGuGCugCACG------GCcCGG- -5'
23247 3' -57.2 NC_005259.1 + 58976 0.7 0.441481
Target:  5'- gCAGCUCGuCgGCGACGgcgaGCUuGGCCu -3'
miRNA:   3'- aGUUGAGCuGgUGCUGCa---CGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 43728 0.7 0.441481
Target:  5'- gUCGAUggCGGCCAUGcCGccgaGCCGGGCa -3'
miRNA:   3'- -AGUUGa-GCUGGUGCuGCa---CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 65152 0.7 0.450881
Target:  5'- aCAAgUCGaaacggGCCAUGGCccGCCGGGUCa -3'
miRNA:   3'- aGUUgAGC------UGGUGCUGcaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 1412 0.7 0.459434
Target:  5'- aCGACcCGAgCACGGCauacgucGUGCuCGGGCUg -3'
miRNA:   3'- aGUUGaGCUgGUGCUG-------CACG-GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 57679 0.7 0.470003
Target:  5'- cCGGCcaaUCGACCGUGGCcagguUGCCGGGCUu -3'
miRNA:   3'- aGUUG---AGCUGGUGCUGc----ACGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 68411 0.7 0.479718
Target:  5'- cCAACguaGACCuuGACGccucGCgCGGGCCg -3'
miRNA:   3'- aGUUGag-CUGGugCUGCa---CG-GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 33577 0.7 0.48953
Target:  5'- -gAACUUGACCGCGuCG---CGGGCCa -3'
miRNA:   3'- agUUGAGCUGGUGCuGCacgGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 27796 0.7 0.48953
Target:  5'- gUCA--UCGACCACGACGUGauacgagaCCuGGCUc -3'
miRNA:   3'- -AGUugAGCUGGUGCUGCAC--------GGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 13003 0.69 0.499435
Target:  5'- uUCGcACUCGGCUACGcCGccGCCcGGCCc -3'
miRNA:   3'- -AGU-UGAGCUGGUGCuGCa-CGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 42457 0.69 0.499435
Target:  5'- cCAACagucgcCGACUACGGCGagGCCcGGCCc -3'
miRNA:   3'- aGUUGa-----GCUGGUGCUGCa-CGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 68088 0.69 0.499435
Target:  5'- aUCAGCUCGaugGCCgggguaACGACGUaGuUCGGGUCg -3'
miRNA:   3'- -AGUUGAGC---UGG------UGCUGCA-C-GGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 14729 0.69 0.509428
Target:  5'- --cGCUCGucGCCGaGAUGUacgcgcugGCCGGGCCg -3'
miRNA:   3'- aguUGAGC--UGGUgCUGCA--------CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 67412 0.69 0.509428
Target:  5'- -gGGC-CGAcaCCAuCGGgGUGCCGGGCUc -3'
miRNA:   3'- agUUGaGCU--GGU-GCUgCACGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 50381 0.69 0.519504
Target:  5'- -aAACUCGGCC-C-ACGUGUCGcGGCUc -3'
miRNA:   3'- agUUGAGCUGGuGcUGCACGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 22977 0.69 0.529657
Target:  5'- gCAACUCGugCccgguguCGACGccGCCGaGGUCa -3'
miRNA:   3'- aGUUGAGCugGu------GCUGCa-CGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 47942 0.69 0.529657
Target:  5'- -aAGC-CGAUgACGGCgGUGCCGauGGCCg -3'
miRNA:   3'- agUUGaGCUGgUGCUG-CACGGC--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.