miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 66188 0.67 0.413364
Target:  5'- aCCGCUGCCGgUGcaguacGGGUCagGCGCGGUc -3'
miRNA:   3'- -GGCGACGGCgGCu-----CUCGGa-CGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 66051 0.67 0.395754
Target:  5'- aCGUagacGCCGCCGuGGGCCUGCu---- -3'
miRNA:   3'- gGCGa---CGGCGGCuCUCGGACGugcua -5'
23248 3' -61.2 NC_005259.1 + 64687 0.66 0.425975
Target:  5'- gCCGC-GCCGCCGAGcgauacccacauaccGaugcaccacggGCaCUGCACGAa -3'
miRNA:   3'- -GGCGaCGGCGGCUC---------------U-----------CG-GACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 58188 0.68 0.353907
Target:  5'- aCGUcuUGaCCGCCGuGGGCUUGC-CGGUg -3'
miRNA:   3'- gGCG--AC-GGCGGCuCUCGGACGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 53266 0.66 0.468957
Target:  5'- gCCGCUGUCGCCG-GuGCC-GCcaaGAUc -3'
miRNA:   3'- -GGCGACGGCGGCuCuCGGaCGug-CUA- -5'
23248 3' -61.2 NC_005259.1 + 50901 0.66 0.431449
Target:  5'- aCCGCUGCgugcgauagCGCCGcauGAGCC-GCACc-- -3'
miRNA:   3'- -GGCGACG---------GCGGCu--CUCGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 48391 0.66 0.422348
Target:  5'- gUCGUUGCCGCCGAc-GCCcGCcguCGAg -3'
miRNA:   3'- -GGCGACGGCGGCUcuCGGaCGu--GCUa -5'
23248 3' -61.2 NC_005259.1 + 48178 0.69 0.30075
Target:  5'- cCCGCcGCCGCCGGGuGUCggaccggGCAUGc- -3'
miRNA:   3'- -GGCGaCGGCGGCUCuCGGa------CGUGCua -5'
23248 3' -61.2 NC_005259.1 + 47832 0.7 0.241753
Target:  5'- aCCGCUGCCGCUGAcGGuGCgaGCuuuuCGAg -3'
miRNA:   3'- -GGCGACGGCGGCU-CU-CGgaCGu---GCUa -5'
23248 3' -61.2 NC_005259.1 + 47028 0.66 0.478594
Target:  5'- aCCGCcuccaGCagGCCGGGGaUCUGCGCGAg -3'
miRNA:   3'- -GGCGa----CGg-CGGCUCUcGGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 46944 0.71 0.235243
Target:  5'- gCCGC-GCCGCCGAccgcguuGAGCUUGUugGc- -3'
miRNA:   3'- -GGCGaCGGCGGCU-------CUCGGACGugCua -5'
23248 3' -61.2 NC_005259.1 + 46780 0.66 0.468957
Target:  5'- gCCGCgcccGCCggGCCGAacaccGAGCCUGCgaGCGc- -3'
miRNA:   3'- -GGCGa---CGG--CGGCU-----CUCGGACG--UGCua -5'
23248 3' -61.2 NC_005259.1 + 46240 0.71 0.217138
Target:  5'- uCgGCUGCCGCCugaGgcacgucgaccccgAGGGUCUGCGCGAg -3'
miRNA:   3'- -GgCGACGGCGG---C--------------UCUCGGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 45321 0.67 0.395754
Target:  5'- -gGCcGCCGCCGAacugcguGGCCUGCGCc-- -3'
miRNA:   3'- ggCGaCGGCGGCUc------UCGGACGUGcua -5'
23248 3' -61.2 NC_005259.1 + 45176 0.7 0.273248
Target:  5'- uUGUUGCgCGCCGAG-GUCaGCGCGGUg -3'
miRNA:   3'- gGCGACG-GCGGCUCuCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 45004 0.66 0.468957
Target:  5'- aCCGCcGaCCGCCG-GGGCC-GCGCc-- -3'
miRNA:   3'- -GGCGaC-GGCGGCuCUCGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 43885 0.68 0.345922
Target:  5'- gCGUUGCCGCCGAcauuGCCcGCGCc-- -3'
miRNA:   3'- gGCGACGGCGGCUcu--CGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 43023 0.69 0.307951
Target:  5'- aCCGgcgaUGCCGCCGAGcaGGCCgccgaGCAgCGAa -3'
miRNA:   3'- -GGCg---ACGGCGGCUC--UCGGa----CGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 41404 0.66 0.458472
Target:  5'- gCGC-GCCGCuCGGGGuGCCcacgaugUGCACGGg -3'
miRNA:   3'- gGCGaCGGCG-GCUCU-CGG-------ACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 40640 0.66 0.440663
Target:  5'- aUGCcGUCGCCGAGAaagucaugcucGCCgagcaGCGCGAg -3'
miRNA:   3'- gGCGaCGGCGGCUCU-----------CGGa----CGUGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.