miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 44512 0.72 0.206074
Target:  5'- uGCCCuGGCCACCcacgccgcCGCCCGGcagUCCacucaUGCCg -3'
miRNA:   3'- -UGGG-CCGGUGGu-------GUGGGCU---AGG-----ACGG- -5'
23249 5' -61.5 NC_005259.1 + 8164 0.72 0.211296
Target:  5'- gGCCaUGGCCugagGCUACcCCCGuggCCUGCCg -3'
miRNA:   3'- -UGG-GCCGG----UGGUGuGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 8021 0.71 0.222081
Target:  5'- cCCCGGCgGCCAC-CCCGuuucgcgaacuGUCCgacaccGCCg -3'
miRNA:   3'- uGGGCCGgUGGUGuGGGC-----------UAGGa-----CGG- -5'
23249 5' -61.5 NC_005259.1 + 25914 0.71 0.227648
Target:  5'- cGCCUGaGCCGCCGC-CgCCGGUCCggugagcgcacGCCg -3'
miRNA:   3'- -UGGGC-CGGUGGUGuG-GGCUAGGa----------CGG- -5'
23249 5' -61.5 NC_005259.1 + 52934 0.71 0.233332
Target:  5'- gGCCUGGUCGCUcaACGCCCGuaagcaCCcGCCg -3'
miRNA:   3'- -UGGGCCGGUGG--UGUGGGCua----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 34225 0.71 0.233332
Target:  5'- cCCCGGC----GCugCCGGUCUUGCCg -3'
miRNA:   3'- uGGGCCGguggUGugGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 7190 0.7 0.251103
Target:  5'- uGCCCGGCCugCggACGCaCCGGg-CUGCg -3'
miRNA:   3'- -UGGGCCGGugG--UGUG-GGCUagGACGg -5'
23249 5' -61.5 NC_005259.1 + 26538 0.7 0.251103
Target:  5'- aGCuuGGCCACCACGaucucaCCGAggCUGUa -3'
miRNA:   3'- -UGggCCGGUGGUGUg-----GGCUagGACGg -5'
23249 5' -61.5 NC_005259.1 + 61856 0.7 0.26356
Target:  5'- cACCuCGGCCACCGC-CUCG--CgUGCCg -3'
miRNA:   3'- -UGG-GCCGGUGGUGuGGGCuaGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 5415 0.7 0.28318
Target:  5'- cGCgCUGGCCGCCACgucgaggucugcGCCCG---CUGCCg -3'
miRNA:   3'- -UG-GGCCGGUGGUG------------UGGGCuagGACGG- -5'
23249 5' -61.5 NC_005259.1 + 35828 0.7 0.28318
Target:  5'- cCCCGcauaGCCGCCAcCGCCCGcgagcacagGUCCgccGCCg -3'
miRNA:   3'- uGGGC----CGGUGGU-GUGGGC---------UAGGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 46766 0.69 0.289972
Target:  5'- cACCUGcGCCgacaGCCGCGCCCG--CCggGCCg -3'
miRNA:   3'- -UGGGC-CGG----UGGUGUGGGCuaGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 4409 0.69 0.296891
Target:  5'- aACUacgagGGCCGCCACcgcgcGCCCGAggUCgaGCCg -3'
miRNA:   3'- -UGGg----CCGGUGGUG-----UGGGCU--AGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 38944 0.69 0.303938
Target:  5'- uGCCCGG-UGCCGCugCCGccgagagCCUGCa -3'
miRNA:   3'- -UGGGCCgGUGGUGugGGCua-----GGACGg -5'
23249 5' -61.5 NC_005259.1 + 61117 0.69 0.303938
Target:  5'- aGCCCGaGCCgagcacgguGCCGuuCUCGAUCCgUGCCg -3'
miRNA:   3'- -UGGGC-CGG---------UGGUguGGGCUAGG-ACGG- -5'
23249 5' -61.5 NC_005259.1 + 67983 0.69 0.306792
Target:  5'- gGCgUGGCCACCGCcgcgagcgucgacuuGCCC--UCCUGCg -3'
miRNA:   3'- -UGgGCCGGUGGUG---------------UGGGcuAGGACGg -5'
23249 5' -61.5 NC_005259.1 + 4358 0.69 0.311113
Target:  5'- aGCgCCGGaCGgCACGCCCGugcCCUGCUc -3'
miRNA:   3'- -UG-GGCCgGUgGUGUGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 63674 0.69 0.318415
Target:  5'- cACCuCGGgCACCgGCGCgCCGGggaucugcgCCUGCCc -3'
miRNA:   3'- -UGG-GCCgGUGG-UGUG-GGCUa--------GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 41247 0.69 0.325846
Target:  5'- gAUCCGGUgcgccuCACCGC-CCCGGUCgaGCa -3'
miRNA:   3'- -UGGGCCG------GUGGUGuGGGCUAGgaCGg -5'
23249 5' -61.5 NC_005259.1 + 45315 0.69 0.325846
Target:  5'- cGCCgaGGCCGCCGCcgaacugcgugGCCUGcgCCgccuggGCCg -3'
miRNA:   3'- -UGGg-CCGGUGGUG-----------UGGGCuaGGa-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.