miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23250 5' -57.5 NC_005259.1 + 68736 0.7 0.430057
Target:  5'- gUCGCCGCUUGCCgagCUCGACCcCGgcGa -3'
miRNA:   3'- -GGUGGCGAGUGGg--GAGCUGGuGCauC- -5'
23250 5' -57.5 NC_005259.1 + 68280 0.66 0.662597
Target:  5'- gCACCGUccUCGCCCCauacaucgggaUCGGgCGCGUc- -3'
miRNA:   3'- gGUGGCG--AGUGGGG-----------AGCUgGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 67029 0.66 0.714575
Target:  5'- -gGCgGUggugUACCCCUCGACgGCGa-- -3'
miRNA:   3'- ggUGgCGa---GUGGGGAGCUGgUGCauc -5'
23250 5' -57.5 NC_005259.1 + 62823 0.67 0.641557
Target:  5'- gCGCCGCUUGCCCgCgaggUCGAgCGCGcGGu -3'
miRNA:   3'- gGUGGCGAGUGGG-G----AGCUgGUGCaUC- -5'
23250 5' -57.5 NC_005259.1 + 62397 0.73 0.31373
Target:  5'- -aACCGCcCGCCUgCUCGACCACGg-- -3'
miRNA:   3'- ggUGGCGaGUGGG-GAGCUGGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 62206 0.73 0.299193
Target:  5'- gUCACCGCUCACacgaggugCCUCGACCuCGg-- -3'
miRNA:   3'- -GGUGGCGAGUGg-------GGAGCUGGuGCauc -5'
23250 5' -57.5 NC_005259.1 + 61855 0.68 0.59945
Target:  5'- gCACCucgGC-CACCgCCUCGcguGCCGCGUGa -3'
miRNA:   3'- gGUGG---CGaGUGG-GGAGC---UGGUGCAUc -5'
23250 5' -57.5 NC_005259.1 + 56273 0.72 0.366272
Target:  5'- gCCGCCGCcCGgCCCguaucggcaccagcaGACCACGUGGc -3'
miRNA:   3'- -GGUGGCGaGUgGGGag-------------CUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 55829 0.66 0.704289
Target:  5'- -gGCCGC-CGCgUCCUCGACgCGUGUGGa -3'
miRNA:   3'- ggUGGCGaGUG-GGGAGCUG-GUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 51742 0.71 0.411933
Target:  5'- gCCACCGC-CACgCUCUCGGCaGCGUu- -3'
miRNA:   3'- -GGUGGCGaGUG-GGGAGCUGgUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 48139 0.7 0.467658
Target:  5'- aCCACCGC-CGCCCC--GGCCACc--- -3'
miRNA:   3'- -GGUGGCGaGUGGGGagCUGGUGcauc -5'
23250 5' -57.5 NC_005259.1 + 48024 0.71 0.386513
Target:  5'- gCACCGCgcccacgauguugacCACCCCggUGGCCACGgcGg -3'
miRNA:   3'- gGUGGCGa--------------GUGGGGa-GCUGGUGCauC- -5'
23250 5' -57.5 NC_005259.1 + 46941 0.68 0.54744
Target:  5'- cCCGCCGC--GCCgC-CGACCGCGUu- -3'
miRNA:   3'- -GGUGGCGagUGGgGaGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 46693 0.78 0.147365
Target:  5'- gCCGCCGCcgCGUCCCUCGACgCGCGUGc -3'
miRNA:   3'- -GGUGGCGa-GUGGGGAGCUG-GUGCAUc -5'
23250 5' -57.5 NC_005259.1 + 46166 0.66 0.683533
Target:  5'- aUACCGCUUGCCCgC-CGGgCGCGUc- -3'
miRNA:   3'- gGUGGCGAGUGGG-GaGCUgGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 45681 0.72 0.358057
Target:  5'- aCCGCCuGCUCagGCCCUuacggaaccgcgagUUGAUCGCGUAGa -3'
miRNA:   3'- -GGUGG-CGAG--UGGGG--------------AGCUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 45652 0.7 0.439292
Target:  5'- gCCGCCGUgaaCACCgC-CGuCCGCGUAGu -3'
miRNA:   3'- -GGUGGCGa--GUGGgGaGCuGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 45322 0.66 0.70119
Target:  5'- gCCGCCGCcgaacugcguggccUgCGCCgCCUgGGCCgccGCGUAGu -3'
miRNA:   3'- -GGUGGCG--------------A-GUGG-GGAgCUGG---UGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 44727 0.71 0.385655
Target:  5'- gCACCcgGCagCGCgCCCUCGACCGCGccgAGg -3'
miRNA:   3'- gGUGG--CGa-GUG-GGGAGCUGGUGCa--UC- -5'
23250 5' -57.5 NC_005259.1 + 43842 0.7 0.439292
Target:  5'- gCCGCCGCUCGCCaugCCgagCGcACC-CGUGa -3'
miRNA:   3'- -GGUGGCGAGUGG---GGa--GC-UGGuGCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.