miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23252 5' -66.6 NC_005259.1 + 16497 0.71 0.11078
Target:  5'- aCCCGCGCgcaugGCCgagaGCGAGGCgCUGCGAg -3'
miRNA:   3'- cGGGCGCGg----CGGg---CGUUCCG-GGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 9803 0.71 0.113665
Target:  5'- cGCUCGCGCCacuaccGCCCGCAccGCCgggUGCGGc -3'
miRNA:   3'- -CGGGCGCGG------CGGGCGUucCGG---GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 64017 0.71 0.11662
Target:  5'- -aCCGCGCCcgagGCgCgGCGAGGCCgGUGAc -3'
miRNA:   3'- cgGGCGCGG----CG-GgCGUUCCGGgCGCU- -5'
23252 5' -66.6 NC_005259.1 + 37693 0.71 0.119341
Target:  5'- uGCCCGCGCCGgacugauuuugcCCUGCcagacccGAGGCaCCGCc- -3'
miRNA:   3'- -CGGGCGCGGC------------GGGCG-------UUCCG-GGCGcu -5'
23252 5' -66.6 NC_005259.1 + 63699 0.71 0.119341
Target:  5'- aUCUGCGCCuGCCCaGCGgggaucgGGGCCUGCGc -3'
miRNA:   3'- cGGGCGCGG-CGGG-CGU-------UCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 43256 0.71 0.119646
Target:  5'- cGCCCGCGCCggguGCcugagaguugaCCGCAGcGCCCGCc- -3'
miRNA:   3'- -CGGGCGCGG----CG-----------GGCGUUcCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 66840 0.71 0.119646
Target:  5'- gGCUCaUGCCGCCCGCAcGGGCCaC-CGAu -3'
miRNA:   3'- -CGGGcGCGGCGGGCGU-UCCGG-GcGCU- -5'
23252 5' -66.6 NC_005259.1 + 30172 0.71 0.120877
Target:  5'- aGgCCGCcacaGCCGCCCGCAcagcacuaccccgucGGuGCCCGCc- -3'
miRNA:   3'- -CgGGCG----CGGCGGGCGU---------------UC-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 46767 0.71 0.122746
Target:  5'- aCCUGCGCCgacagccgcGCCCGCcGGGCCgaacaccgagccUGCGAg -3'
miRNA:   3'- cGGGCGCGG---------CGGGCGuUCCGG------------GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 38944 0.71 0.12592
Target:  5'- uGCCCgGUGCCGCugCCGcCGAGaGCCUGCa- -3'
miRNA:   3'- -CGGG-CGCGGCG--GGC-GUUC-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 66308 0.71 0.12592
Target:  5'- cGCauGUGCUGCCCGCAGauguauCCCGCGAg -3'
miRNA:   3'- -CGggCGCGGCGGGCGUUcc----GGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 39900 0.71 0.12592
Target:  5'- -gUCGcCGCCGCCCGCcucgauccgucGAGGgCCGCGu -3'
miRNA:   3'- cgGGC-GCGGCGGGCG-----------UUCCgGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 35199 0.71 0.12592
Target:  5'- aGCaCCGUGCCGCCUgaggcgGCGAGGaaCGUGAc -3'
miRNA:   3'- -CG-GGCGCGGCGGG------CGUUCCggGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 10677 0.71 0.12917
Target:  5'- gGUCUGCGCCGCCUcuuugucgccguugaGCAuggacggguaguuGGCCCGCa- -3'
miRNA:   3'- -CGGGCGCGGCGGG---------------CGUu------------CCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 36958 0.7 0.132497
Target:  5'- uGCCCGCGagaCCGCCUc---GGCCCGCa- -3'
miRNA:   3'- -CGGGCGC---GGCGGGcguuCCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 43901 0.7 0.132497
Target:  5'- uGCCCGCGCCGgCUGaucgauGGGCa-GCGAc -3'
miRNA:   3'- -CGGGCGCGGCgGGCgu----UCCGggCGCU- -5'
23252 5' -66.6 NC_005259.1 + 46585 0.7 0.135903
Target:  5'- -aCCGCGCCGCCCG--AGGCgaGCa- -3'
miRNA:   3'- cgGGCGCGGCGGGCguUCCGggCGcu -5'
23252 5' -66.6 NC_005259.1 + 35837 0.7 0.142958
Target:  5'- -gCCGCcaCCGCCCGCGagcacAGGUCCGCc- -3'
miRNA:   3'- cgGGCGc-GGCGGGCGU-----UCCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 50105 0.7 0.14661
Target:  5'- cGCCCGagGuuGCCCGUAcgcacGGGCaCCGCc- -3'
miRNA:   3'- -CGGGCg-CggCGGGCGU-----UCCG-GGCGcu -5'
23252 5' -66.6 NC_005259.1 + 37170 0.7 0.14661
Target:  5'- cGCCCGCcgaCGCCgCGCGAGGacgagCUGCGGc -3'
miRNA:   3'- -CGGGCGcg-GCGG-GCGUUCCg----GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.