miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 7646 0.66 0.577564
Target:  5'- gCCGAGUucgACCgccGUCGuCGUGAGCGCc -3'
miRNA:   3'- -GGCUCG---UGGaacCGGUcGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 47989 0.66 0.577564
Target:  5'- gCCGGGCAgCgcaagaccGGCUuGUGUGAGCuGCu -3'
miRNA:   3'- -GGCUCGUgGaa------CCGGuCGCGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 9609 0.66 0.577564
Target:  5'- -aGAGCACCgUGGCaucgaacaccGCGCcGGUGCc -3'
miRNA:   3'- ggCUCGUGGaACCGgu--------CGCGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 2954 0.66 0.567195
Target:  5'- gCGAG-ACCcUGGCCAccgcGCGCGAaauccucuacGCGUc -3'
miRNA:   3'- gGCUCgUGGaACCGGU----CGCGCU----------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 30678 0.66 0.567195
Target:  5'- gCGAGUAgC-UGGCCaccugaggcAGCaCGAGCGUg -3'
miRNA:   3'- gGCUCGUgGaACCGG---------UCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 13421 0.66 0.567195
Target:  5'- gCCGGGgucgcCGCCggGGCCgcgcuaGGCGUGAccgucgGCGCg -3'
miRNA:   3'- -GGCUC-----GUGGaaCCGG------UCGCGCU------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 63452 0.66 0.567195
Target:  5'- aUCGAgGC-CCaUGGCCAaccGCGUGAuCGCg -3'
miRNA:   3'- -GGCU-CGuGGaACCGGU---CGCGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 47324 0.66 0.567195
Target:  5'- aCCG-GCgGCCUUGGUCAGCcccGUGAuCGUu -3'
miRNA:   3'- -GGCuCG-UGGAACCGGUCG---CGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 2183 0.66 0.560995
Target:  5'- gCCGAGguCaugGGCCGcuacggcaaggugcuGCGCaccGAGCGCc -3'
miRNA:   3'- -GGCUCguGgaaCCGGU---------------CGCG---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 45838 0.66 0.556873
Target:  5'- gCCGuccGCACCaccggGGCCGGUGgGAccGgGCa -3'
miRNA:   3'- -GGCu--CGUGGaa---CCGGUCGCgCU--CgCG- -5'
23254 3' -59.6 NC_005259.1 + 7236 0.66 0.556873
Target:  5'- aCGAcgGCAgCCgc-GCCGGUGuCGAGUGCg -3'
miRNA:   3'- gGCU--CGU-GGaacCGGUCGC-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 36281 0.66 0.556873
Target:  5'- uUGAGCAgcgcgauuuUCUUG---AGCGCGAGCGCu -3'
miRNA:   3'- gGCUCGU---------GGAACcggUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 6522 0.66 0.556873
Target:  5'- gCCGuGCGCgCgacaaccGGCCucGGgGCGAGCGg -3'
miRNA:   3'- -GGCuCGUG-Gaa-----CCGG--UCgCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 31614 0.66 0.556873
Target:  5'- uUCGGGUcUUUUGucGCCAGCGCGuuguacuGCGCc -3'
miRNA:   3'- -GGCUCGuGGAAC--CGGUCGCGCu------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 43818 0.66 0.546607
Target:  5'- gCCGGGCguaccGCCggacacagGGCCGccgcucgccauGC-CGAGCGCa -3'
miRNA:   3'- -GGCUCG-----UGGaa------CCGGU-----------CGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 64618 0.66 0.546607
Target:  5'- gCGAGCGCgacgGGCagCAGCGCccaccaaucGAGCGUc -3'
miRNA:   3'- gGCUCGUGgaa-CCG--GUCGCG---------CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 61925 0.66 0.546607
Target:  5'- gUCG-GCAgCUcGGUCucucGCGCGGGUGCc -3'
miRNA:   3'- -GGCuCGUgGAaCCGGu---CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 45478 0.66 0.540476
Target:  5'- gCCGAGCuucuggccgcuggugGCCUUGGUCGcuguggccaccGCGCcGGUGUu -3'
miRNA:   3'- -GGCUCG---------------UGGAACCGGU-----------CGCGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 63645 0.66 0.540476
Target:  5'- gCGAGCugCUcgcUGGCCGGgaCGcCGgacaccucgggcaccGGCGCg -3'
miRNA:   3'- gGCUCGugGA---ACCGGUC--GC-GC---------------UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 64800 0.66 0.536401
Target:  5'- gCUGuGUGCCUcGGCCucGGCGgcaaUGAGCGUg -3'
miRNA:   3'- -GGCuCGUGGAaCCGG--UCGC----GCUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.