miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 25916 0.72 0.265358
Target:  5'- cCUGAGcCGCCgccGCCGGUccgGUGAGCGCa -3'
miRNA:   3'- -GGCUC-GUGGaacCGGUCG---CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 61851 0.71 0.27123
Target:  5'- gUGAGCACCUcGGCCAccgccucGCGUGccGCGUg -3'
miRNA:   3'- gGCUCGUGGAaCCGGU-------CGCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 34705 0.71 0.271889
Target:  5'- gCCGAcCAUCU--GCC-GCGCGAGCGCc -3'
miRNA:   3'- -GGCUcGUGGAacCGGuCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 52597 0.71 0.277206
Target:  5'- gCCGAGCACCagcgccguacggUGGCCAacuaCGuCGAGCuGCg -3'
miRNA:   3'- -GGCUCGUGGa-----------ACCGGUc---GC-GCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 5452 0.71 0.281248
Target:  5'- gCCGAcagaucgcaugagcaGCACCaaUGGCCGGUGCaauAGCGCc -3'
miRNA:   3'- -GGCU---------------CGUGGa-ACCGGUCGCGc--UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 4291 0.71 0.292255
Target:  5'- aCGAGCacggACCggcGGCCcuGCGaUGAGCGCg -3'
miRNA:   3'- gGCUCG----UGGaa-CCGGu-CGC-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50406 0.71 0.292255
Target:  5'- gCCGAGCgcgccgguGCCUUGaCCGGCuCGGGCaGCg -3'
miRNA:   3'- -GGCUCG--------UGGAACcGGUCGcGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 36410 0.71 0.299304
Target:  5'- uUGAGCGCCUcaagggucaUGGUCuGCGC-AGCGUc -3'
miRNA:   3'- gGCUCGUGGA---------ACCGGuCGCGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 34407 0.71 0.299304
Target:  5'- aCCGGGCugUcaUUGGuCCA-CGCGAGaCGCc -3'
miRNA:   3'- -GGCUCGugG--AACC-GGUcGCGCUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 63862 0.71 0.299304
Target:  5'- gCGAGgugGCCggcUGGCCuuGCGUGGGCGUg -3'
miRNA:   3'- gGCUCg--UGGa--ACCGGu-CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 9707 0.71 0.306483
Target:  5'- aCUGGGCACCguccucgGGCCGGU-CGAGCu- -3'
miRNA:   3'- -GGCUCGUGGaa-----CCGGUCGcGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 33106 0.7 0.328809
Target:  5'- gCGAGCguGCCUguagGGCCA-CGCGGcagccgccGCGCg -3'
miRNA:   3'- gGCUCG--UGGAa---CCGGUcGCGCU--------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 848 0.7 0.328809
Target:  5'- gUCGcuGCGCa--GGCCgAGUGCGAGCGUg -3'
miRNA:   3'- -GGCu-CGUGgaaCCGG-UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 46773 0.7 0.328809
Target:  5'- gCCGAcagccGCGCCcgccgGGCCgaacaccgAGCcuGCGAGCGCa -3'
miRNA:   3'- -GGCU-----CGUGGaa---CCGG--------UCG--CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 21893 0.7 0.334188
Target:  5'- aCC-AGCGCCUcGGgaauugcgcccguaCCAGCGCGAG-GCa -3'
miRNA:   3'- -GGcUCGUGGAaCC--------------GGUCGCGCUCgCG- -5'
23254 3' -59.6 NC_005259.1 + 12011 0.7 0.352314
Target:  5'- -aGAGUcggugGCCUUGuaCGGUGCGGGCGg -3'
miRNA:   3'- ggCUCG-----UGGAACcgGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 46056 0.7 0.355536
Target:  5'- gCCGAugGCCUUGagcugcucaagcaccGCCGGgGCGAGCGg -3'
miRNA:   3'- -GGCUcgUGGAAC---------------CGGUCgCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 30554 0.69 0.360409
Target:  5'- aCCGAGCGguuguugacgcCCUUGGCC-GCaGU-AGCGCu -3'
miRNA:   3'- -GGCUCGU-----------GGAACCGGuCG-CGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 31167 0.69 0.360409
Target:  5'- aUCGAGCucgcCCUUGaGCCAGUcgGCGAGgaUGCc -3'
miRNA:   3'- -GGCUCGu---GGAAC-CGGUCG--CGCUC--GCG- -5'
23254 3' -59.6 NC_005259.1 + 52389 0.69 0.368633
Target:  5'- gCGcAGCcuGCCUcgGGCCaucgaGGUGUGGGCGCu -3'
miRNA:   3'- gGC-UCG--UGGAa-CCGG-----UCGCGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.