miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 3' -61.3 NC_005259.1 + 16835 0.66 0.527352
Target:  5'- uCCGACacaaGGCGGguGGCCauGACUGaUACCGGc -3'
miRNA:   3'- -GGCUG----CCGCU--CCGGc-CUGAC-GUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 3298 0.66 0.527352
Target:  5'- gCCGGucccuCGGCGAGcGCUGcgucGACgugaGCGCCGGg -3'
miRNA:   3'- -GGCU-----GCCGCUC-CGGC----CUGa---CGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 37499 0.66 0.527352
Target:  5'- cCCGGCGGUGA-GCaCGauGCUGC-CCGAc -3'
miRNA:   3'- -GGCUGCCGCUcCG-GCc-UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 7427 0.66 0.517502
Target:  5'- gUCGGCGGUGcccGcGCCGcauGGCaGCGCCGAg -3'
miRNA:   3'- -GGCUGCCGCu--C-CGGC---CUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 41498 0.66 0.517502
Target:  5'- cUCGGCGGUGgcGGGCagaccguGGAuCUGCACgGGg -3'
miRNA:   3'- -GGCUGCCGC--UCCGg------CCU-GACGUGgCU- -5'
23255 3' -61.3 NC_005259.1 + 13335 0.66 0.517502
Target:  5'- aCCcACGGCGGGaCCGccccGCcGCACCGAu -3'
miRNA:   3'- -GGcUGCCGCUCcGGCc---UGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 28236 0.66 0.516521
Target:  5'- gUCGGCGGCGGGGU-GGucgaucacgauccAUUGC-CCGAa -3'
miRNA:   3'- -GGCUGCCGCUCCGgCC-------------UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 737 0.66 0.504808
Target:  5'- aCCGGCGGUGccuacgccGCCGGugccuaccgcguccACcGCGCCGAg -3'
miRNA:   3'- -GGCUGCCGCuc------CGGCC--------------UGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 13454 0.66 0.498029
Target:  5'- aCCGuCGGCGcGGcGCUGGugcucaccgcGCUGC-CCGAc -3'
miRNA:   3'- -GGCuGCCGC-UC-CGGCC----------UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 14650 0.66 0.498029
Target:  5'- aCGAUGGCGuGGGCucagcccgacuCGGGCcgcgUGCACuCGAu -3'
miRNA:   3'- gGCUGCCGC-UCCG-----------GCCUG----ACGUG-GCU- -5'
23255 3' -61.3 NC_005259.1 + 47605 0.66 0.498029
Target:  5'- uCUGGuCGGCGAGGCUGaGGuucUUGUcgucGCCGAg -3'
miRNA:   3'- -GGCU-GCCGCUCCGGC-CU---GACG----UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 19249 0.66 0.488415
Target:  5'- aUCGAUGGCcgccuGCCGGGCcGC-CCGAu -3'
miRNA:   3'- -GGCUGCCGcuc--CGGCCUGaCGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 60344 0.66 0.488415
Target:  5'- -aGGCGGCGAucaGGUCGaGGCccUGC-CCGAa -3'
miRNA:   3'- ggCUGCCGCU---CCGGC-CUG--ACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 11775 0.66 0.488415
Target:  5'- cUCGACGGCGAGGgagucccacacaUCGGGC-GCgACCc- -3'
miRNA:   3'- -GGCUGCCGCUCC------------GGCCUGaCG-UGGcu -5'
23255 3' -61.3 NC_005259.1 + 44870 0.66 0.47889
Target:  5'- aCCGGCGGCGAGaUCcGAC-GCGCCc- -3'
miRNA:   3'- -GGCUGCCGCUCcGGcCUGaCGUGGcu -5'
23255 3' -61.3 NC_005259.1 + 42466 0.67 0.469457
Target:  5'- gCCGAcuaCGGCGAGGCCcGGCccGUagaGCCGu -3'
miRNA:   3'- -GGCU---GCCGCUCCGGcCUGa-CG---UGGCu -5'
23255 3' -61.3 NC_005259.1 + 26441 0.67 0.469457
Target:  5'- gCCGAgCgGGCG-GGCCGG--UGgGCCGAu -3'
miRNA:   3'- -GGCU-G-CCGCuCCGGCCugACgUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 51519 0.67 0.466646
Target:  5'- cUCGACGcGCGugaccucgugcacgGGGCCGGGCaagUGCACg-- -3'
miRNA:   3'- -GGCUGC-CGC--------------UCCGGCCUG---ACGUGgcu -5'
23255 3' -61.3 NC_005259.1 + 67743 0.67 0.46012
Target:  5'- aCCGGCGGCcacuAGGCCGccccGGCcaccgGCcACCGAc -3'
miRNA:   3'- -GGCUGCCGc---UCCGGC----CUGa----CG-UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 27389 0.67 0.46012
Target:  5'- aCCGGCGGCGGuGUCGG-CaGCGgCGGc -3'
miRNA:   3'- -GGCUGCCGCUcCGGCCuGaCGUgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.