miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 3' -61.3 NC_005259.1 + 46397 0.7 0.304217
Target:  5'- gCCGcGCGGUGAGGgcaucgaaaCCGGGCugUGCACCc- -3'
miRNA:   3'- -GGC-UGCCGCUCC---------GGCCUG--ACGUGGcu -5'
23255 3' -61.3 NC_005259.1 + 16585 0.7 0.310607
Target:  5'- gCCGAgGacaucgcccGCGAGGCCaucGGACUGUucaacggGCCGAg -3'
miRNA:   3'- -GGCUgC---------CGCUCCGG---CCUGACG-------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 36929 0.69 0.318555
Target:  5'- gCCGACGGUGAGuGUU--GCUGuCACCGGg -3'
miRNA:   3'- -GGCUGCCGCUC-CGGccUGAC-GUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 67044 0.69 0.318555
Target:  5'- cUCGACGGCGAGcacCCG---UGCGCCGAu -3'
miRNA:   3'- -GGCUGCCGCUCc--GGCcugACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 41724 0.69 0.318555
Target:  5'- aCCGGCGGCGGGGa-GGACaccGCcUCGAc -3'
miRNA:   3'- -GGCUGCCGCUCCggCCUGa--CGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 45619 0.69 0.318555
Target:  5'- cUCGAUGcccGCcGGGCCGGGCagcGCGCCGGu -3'
miRNA:   3'- -GGCUGC---CGcUCCGGCCUGa--CGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 7181 0.69 0.333395
Target:  5'- aCCGGCGaGUGcccGGCCugcGGAC-GCACCGGg -3'
miRNA:   3'- -GGCUGC-CGCu--CCGG---CCUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 42506 0.69 0.344081
Target:  5'- uCCGGCGGUGuGGCCaGcagccguccggccccGAUggGCACCGAg -3'
miRNA:   3'- -GGCUGCCGCuCCGG-C---------------CUGa-CGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 33599 0.69 0.348736
Target:  5'- aCCGA-GGCGcGGUCGaGCUGCAaCCGGc -3'
miRNA:   3'- -GGCUgCCGCuCCGGCcUGACGU-GGCU- -5'
23255 3' -61.3 NC_005259.1 + 5068 0.69 0.348736
Target:  5'- aUCGugGGCcgggucgacGGGCCGGugU-CACCGGc -3'
miRNA:   3'- -GGCugCCGc--------UCCGGCCugAcGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 58563 0.69 0.348736
Target:  5'- uCgGGCGGUuGGGCCGGaucgcggcgcgGCUGCcggGCCGGa -3'
miRNA:   3'- -GgCUGCCGcUCCGGCC-----------UGACG---UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 25422 0.69 0.356593
Target:  5'- -gGACGGCGAGGUCgaGGAaUGCgaGCCGu -3'
miRNA:   3'- ggCUGCCGCUCCGG--CCUgACG--UGGCu -5'
23255 3' -61.3 NC_005259.1 + 26138 0.68 0.372676
Target:  5'- uCCGACGccgcCGAGGCCGaGCaGC-CCGAa -3'
miRNA:   3'- -GGCUGCc---GCUCCGGCcUGaCGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 8803 0.68 0.372676
Target:  5'- uUGGCGaggaucuucucGCGccGGGCCGGugaguugacgcGCUGCGCCGAc -3'
miRNA:   3'- gGCUGC-----------CGC--UCCGGCC-----------UGACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 60649 0.68 0.372676
Target:  5'- uUCGACGGUGAuuucggGGCCauGACgcacgcguucUGCACCGAg -3'
miRNA:   3'- -GGCUGCCGCU------CCGGc-CUG----------ACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 11300 0.68 0.372676
Target:  5'- gUCGACGGgcgUGAGGCCGaGACggGCGCg-- -3'
miRNA:   3'- -GGCUGCC---GCUCCGGC-CUGa-CGUGgcu -5'
23255 3' -61.3 NC_005259.1 + 4257 0.68 0.372676
Target:  5'- cUCGACuGCGAGGacaaCGGgcgGCUGCGCUGc -3'
miRNA:   3'- -GGCUGcCGCUCCg---GCC---UGACGUGGCu -5'
23255 3' -61.3 NC_005259.1 + 24227 0.68 0.389246
Target:  5'- gUGAcCGGCGGGGCCGag--GCACgCGAg -3'
miRNA:   3'- gGCU-GCCGCUCCGGCcugaCGUG-GCU- -5'
23255 3' -61.3 NC_005259.1 + 17763 0.68 0.39771
Target:  5'- gCCGcCGcGCGccGGGCCGaGC-GCACCGAg -3'
miRNA:   3'- -GGCuGC-CGC--UCCGGCcUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 47171 0.68 0.39771
Target:  5'- aCCGuaGCGGCGaAGGUCGG-CgGUGCCGu -3'
miRNA:   3'- -GGC--UGCCGC-UCCGGCCuGaCGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.