Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23255 | 5' | -54.9 | NC_005259.1 | + | 36030 | 1.15 | 0.000639 |
Target: 5'- aGGUCGACAUGAUCAGCGAGGCCACCCg -3' miRNA: 3'- -CCAGCUGUACUAGUCGCUCCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 43951 | 0.79 | 0.188947 |
Target: 5'- cGUCGGC--GAUgGGCGGGGCCGCCg -3' miRNA: 3'- cCAGCUGuaCUAgUCGCUCCGGUGGg -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 17835 | 0.79 | 0.193973 |
Target: 5'- -aUCGACG-GGUgGGcCGAGGCCACCCc -3' miRNA: 3'- ccAGCUGUaCUAgUC-GCUCCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 45137 | 0.78 | 0.220887 |
Target: 5'- aGGUCGGCAaucugcUGAUC-GCucAGGCCGCCCu -3' miRNA: 3'- -CCAGCUGU------ACUAGuCGc-UCCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 17745 | 0.78 | 0.220887 |
Target: 5'- -cUCGACGcGAUCcGUGAGGCCGCCg -3' miRNA: 3'- ccAGCUGUaCUAGuCGCUCCGGUGGg -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 31067 | 0.77 | 0.244655 |
Target: 5'- aGUUGAUcgGGUCGGCGAGGUU-CCCg -3' miRNA: 3'- cCAGCUGuaCUAGUCGCUCCGGuGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 19238 | 0.77 | 0.250919 |
Target: 5'- aGUCGGCgAUGAUCGauggccgccuGCcGGGCCGCCCg -3' miRNA: 3'- cCAGCUG-UACUAGU----------CGcUCCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 49451 | 0.77 | 0.250919 |
Target: 5'- uGGUCGGCAgccgGAUgccCAGC-AGGUCGCCCu -3' miRNA: 3'- -CCAGCUGUa---CUA---GUCGcUCCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 18709 | 0.73 | 0.42296 |
Target: 5'- cGGUCuGACcucGAUCAuCG-GGCCGCCCg -3' miRNA: 3'- -CCAG-CUGua-CUAGUcGCuCCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 16677 | 0.73 | 0.441762 |
Target: 5'- -cUCGAUGUGGUCGGCGAuccuGGgCACCg -3' miRNA: 3'- ccAGCUGUACUAGUCGCU----CCgGUGGg -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 17359 | 0.72 | 0.464935 |
Target: 5'- aGGUCGGCggcucggcgcuggucGUGGUCGacuGCGAcacuGCCGCCCa -3' miRNA: 3'- -CCAGCUG---------------UACUAGU---CGCUc---CGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 46271 | 0.72 | 0.490733 |
Target: 5'- gGGUCuGCGcGAgguucugcaaCAGCGGGGCCGCCg -3' miRNA: 3'- -CCAGcUGUaCUa---------GUCGCUCCGGUGGg -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 56079 | 0.71 | 0.499818 |
Target: 5'- cGUCGAgCA-GAUCGGUgcucgucGGGGCCACCg -3' miRNA: 3'- cCAGCU-GUaCUAGUCG-------CUCCGGUGGg -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 60554 | 0.71 | 0.511021 |
Target: 5'- cGUCGGCAUGccCGGUGccgacggucAGGCgGCCCa -3' miRNA: 3'- cCAGCUGUACuaGUCGC---------UCCGgUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 8383 | 0.71 | 0.511021 |
Target: 5'- cGGcaUCGGCGaGAgccUCGGCGAgccgGGCCACCUc -3' miRNA: 3'- -CC--AGCUGUaCU---AGUCGCU----CCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 49069 | 0.71 | 0.520265 |
Target: 5'- cGGUUGGCGcaaggGAUCgcucgagGGUGucauGGCCGCCCg -3' miRNA: 3'- -CCAGCUGUa----CUAG-------UCGCu---CCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 36643 | 0.71 | 0.521296 |
Target: 5'- ---aGGCccgcGAUCAGCGAGccGCCGCCCu -3' miRNA: 3'- ccagCUGua--CUAGUCGCUC--CGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 1329 | 0.71 | 0.538942 |
Target: 5'- uGGUCGAUuucgaGAUCgAGCGcaacggugccuacuGGGCCGCUCg -3' miRNA: 3'- -CCAGCUGua---CUAG-UCGC--------------UCCGGUGGG- -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 52571 | 0.71 | 0.542078 |
Target: 5'- uGGUCGACcgGAcCGGCcuGAGcGUCGCCg -3' miRNA: 3'- -CCAGCUGuaCUaGUCG--CUC-CGGUGGg -5' |
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23255 | 5' | -54.9 | NC_005259.1 | + | 42920 | 0.71 | 0.552572 |
Target: 5'- uGGUgGccuugaGCAUGAggcccucgccgUgGGCGAGGCCGCCg -3' miRNA: 3'- -CCAgC------UGUACU-----------AgUCGCUCCGGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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