miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 5' -54.9 NC_005259.1 + 7661 0.66 0.829951
Target:  5'- cGUCGuCGUGAgcgccccgccUC-GUGGGGUgGCCCg -3'
miRNA:   3'- cCAGCuGUACU----------AGuCGCUCCGgUGGG- -5'
23255 5' -54.9 NC_005259.1 + 56079 0.71 0.499818
Target:  5'- cGUCGAgCA-GAUCGGUgcucgucGGGGCCACCg -3'
miRNA:   3'- cCAGCU-GUaCUAGUCG-------CUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 60554 0.71 0.511021
Target:  5'- cGUCGGCAUGccCGGUGccgacggucAGGCgGCCCa -3'
miRNA:   3'- cCAGCUGUACuaGUCGC---------UCCGgUGGG- -5'
23255 5' -54.9 NC_005259.1 + 8383 0.71 0.511021
Target:  5'- cGGcaUCGGCGaGAgccUCGGCGAgccgGGCCACCUc -3'
miRNA:   3'- -CC--AGCUGUaCU---AGUCGCU----CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 49069 0.71 0.520265
Target:  5'- cGGUUGGCGcaaggGAUCgcucgagGGUGucauGGCCGCCCg -3'
miRNA:   3'- -CCAGCUGUa----CUAG-------UCGCu---CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 36643 0.71 0.521296
Target:  5'- ---aGGCccgcGAUCAGCGAGccGCCGCCCu -3'
miRNA:   3'- ccagCUGua--CUAGUCGCUC--CGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 1329 0.71 0.538942
Target:  5'- uGGUCGAUuucgaGAUCgAGCGcaacggugccuacuGGGCCGCUCg -3'
miRNA:   3'- -CCAGCUGua---CUAG-UCGC--------------UCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 52571 0.71 0.542078
Target:  5'- uGGUCGACcgGAcCGGCcuGAGcGUCGCCg -3'
miRNA:   3'- -CCAGCUGuaCUaGUCG--CUC-CGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 42920 0.71 0.552572
Target:  5'- uGGUgGccuugaGCAUGAggcccucgccgUgGGCGAGGCCGCCg -3'
miRNA:   3'- -CCAgC------UGUACU-----------AgUCGCUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 46271 0.72 0.490733
Target:  5'- gGGUCuGCGcGAgguucugcaaCAGCGGGGCCGCCg -3'
miRNA:   3'- -CCAGcUGUaCUa---------GUCGCUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 17359 0.72 0.464935
Target:  5'- aGGUCGGCggcucggcgcuggucGUGGUCGacuGCGAcacuGCCGCCCa -3'
miRNA:   3'- -CCAGCUG---------------UACUAGU---CGCUc---CGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 16677 0.73 0.441762
Target:  5'- -cUCGAUGUGGUCGGCGAuccuGGgCACCg -3'
miRNA:   3'- ccAGCUGUACUAGUCGCU----CCgGUGGg -5'
23255 5' -54.9 NC_005259.1 + 43951 0.79 0.188947
Target:  5'- cGUCGGC--GAUgGGCGGGGCCGCCg -3'
miRNA:   3'- cCAGCUGuaCUAgUCGCUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 17835 0.79 0.193973
Target:  5'- -aUCGACG-GGUgGGcCGAGGCCACCCc -3'
miRNA:   3'- ccAGCUGUaCUAgUC-GCUCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 45137 0.78 0.220887
Target:  5'- aGGUCGGCAaucugcUGAUC-GCucAGGCCGCCCu -3'
miRNA:   3'- -CCAGCUGU------ACUAGuCGc-UCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 17745 0.78 0.220887
Target:  5'- -cUCGACGcGAUCcGUGAGGCCGCCg -3'
miRNA:   3'- ccAGCUGUaCUAGuCGCUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 31067 0.77 0.244655
Target:  5'- aGUUGAUcgGGUCGGCGAGGUU-CCCg -3'
miRNA:   3'- cCAGCUGuaCUAGUCGCUCCGGuGGG- -5'
23255 5' -54.9 NC_005259.1 + 19238 0.77 0.250919
Target:  5'- aGUCGGCgAUGAUCGauggccgccuGCcGGGCCGCCCg -3'
miRNA:   3'- cCAGCUG-UACUAGU----------CGcUCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 49451 0.77 0.250919
Target:  5'- uGGUCGGCAgccgGAUgccCAGC-AGGUCGCCCu -3'
miRNA:   3'- -CCAGCUGUa---CUA---GUCGcUCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 18709 0.73 0.42296
Target:  5'- cGGUCuGACcucGAUCAuCG-GGCCGCCCg -3'
miRNA:   3'- -CCAG-CUGua-CUAGUcGCuCCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.