miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 5' -54.9 NC_005259.1 + 101 0.69 0.638062
Target:  5'- gGGUCaGACAUGAccgaUCAGCucaccaucaucGAGGCCaacggcaagACCUa -3'
miRNA:   3'- -CCAG-CUGUACU----AGUCG-----------CUCCGG---------UGGG- -5'
23255 5' -54.9 NC_005259.1 + 1329 0.71 0.538942
Target:  5'- uGGUCGAUuucgaGAUCgAGCGcaacggugccuacuGGGCCGCUCg -3'
miRNA:   3'- -CCAGCUGua---CUAG-UCGC--------------UCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 2093 0.67 0.773834
Target:  5'- -cUCGAUuucAUCGGCGAGGCCAa-- -3'
miRNA:   3'- ccAGCUGuacUAGUCGCUCCGGUggg -5'
23255 5' -54.9 NC_005259.1 + 6439 0.67 0.783596
Target:  5'- uGUCGGCAccgucgcgcUGAUCGGC-AGcGUCGCCg -3'
miRNA:   3'- cCAGCUGU---------ACUAGUCGcUC-CGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 6617 0.7 0.573735
Target:  5'- cGUCGAuCAaGAUugcCAGCGGGuCCGCCCg -3'
miRNA:   3'- cCAGCU-GUaCUA---GUCGCUCcGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 6656 0.66 0.829068
Target:  5'- cGGUCGAgggugucCGUGA-CGcGCGA-GCUGCCCg -3'
miRNA:   3'- -CCAGCU-------GUACUaGU-CGCUcCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 7661 0.66 0.829951
Target:  5'- cGUCGuCGUGAgcgccccgccUC-GUGGGGUgGCCCg -3'
miRNA:   3'- cCAGCuGUACU----------AGuCGCUCCGgUGGG- -5'
23255 5' -54.9 NC_005259.1 + 8383 0.71 0.511021
Target:  5'- cGGcaUCGGCGaGAgccUCGGCGAgccgGGCCACCUc -3'
miRNA:   3'- -CC--AGCUGUaCU---AGUCGCU----CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 9984 0.67 0.74375
Target:  5'- cGGUCGAgGUGGcCAGCcGGGGaCUgAUCCg -3'
miRNA:   3'- -CCAGCUgUACUaGUCG-CUCC-GG-UGGG- -5'
23255 5' -54.9 NC_005259.1 + 13298 0.67 0.7539
Target:  5'- -aUUGACGUGAgccagugCGGCGGGGUauaucuugguaACCCa -3'
miRNA:   3'- ccAGCUGUACUa------GUCGCUCCGg----------UGGG- -5'
23255 5' -54.9 NC_005259.1 + 14079 0.66 0.81194
Target:  5'- cGGUgGccuACGUGcgCAGCGAGGUCGa-- -3'
miRNA:   3'- -CCAgC---UGUACuaGUCGCUCCGGUggg -5'
23255 5' -54.9 NC_005259.1 + 14277 0.69 0.647742
Target:  5'- cGUCGACAccgccUGcccaaccaccgauGUCGGUGcguauGGCCGCCCu -3'
miRNA:   3'- cCAGCUGU-----AC-------------UAGUCGCu----CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 14957 0.68 0.691594
Target:  5'- aGGgCGGCAUGGa-GGCGcauucaAGGCCGCCg -3'
miRNA:   3'- -CCaGCUGUACUagUCGC------UCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 16677 0.73 0.441762
Target:  5'- -cUCGAUGUGGUCGGCGAuccuGGgCACCg -3'
miRNA:   3'- ccAGCUGUACUAGUCGCU----CCgGUGGg -5'
23255 5' -54.9 NC_005259.1 + 17359 0.72 0.464935
Target:  5'- aGGUCGGCggcucggcgcuggucGUGGUCGacuGCGAcacuGCCGCCCa -3'
miRNA:   3'- -CCAGCUG---------------UACUAGU---CGCUc---CGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 17745 0.78 0.220887
Target:  5'- -cUCGACGcGAUCcGUGAGGCCGCCg -3'
miRNA:   3'- ccAGCUGUaCUAGuCGCUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 17835 0.79 0.193973
Target:  5'- -aUCGACG-GGUgGGcCGAGGCCACCCc -3'
miRNA:   3'- ccAGCUGUaCUAgUC-GCUCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 18345 0.68 0.712694
Target:  5'- uGGUCGACGccGA-CGGCGAcauguGGCacauGCCCg -3'
miRNA:   3'- -CCAGCUGUa-CUaGUCGCU-----CCGg---UGGG- -5'
23255 5' -54.9 NC_005259.1 + 18709 0.73 0.42296
Target:  5'- cGGUCuGACcucGAUCAuCG-GGCCGCCCg -3'
miRNA:   3'- -CCAG-CUGua-CUAGUcGCuCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 19238 0.77 0.250919
Target:  5'- aGUCGGCgAUGAUCGauggccgccuGCcGGGCCGCCCg -3'
miRNA:   3'- cCAGCUG-UACUAGU----------CGcUCCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.