miRNA display CGI


Results 81 - 100 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 35844 0.71 0.155103
Target:  5'- cCGCCCGCgagcacaGGUccGCCGCCGcguccaccGCAgCCGCCg -3'
miRNA:   3'- -GCGGGUGg------CCG--UGGCGGU--------CGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 28751 0.71 0.156683
Target:  5'- gCGCCCgagcgugagaucgucGCCGGUGCCGacgaGGUAcCCGCCg -3'
miRNA:   3'- -GCGGG---------------UGGCCGUGGCgg--UCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 40661 0.71 0.158678
Target:  5'- uGCUCGCCGaGCAgCGCgAGCGCCuuggugcucaccgGCCc -3'
miRNA:   3'- gCGGGUGGC-CGUgGCGgUCGUGG-------------CGG- -5'
23256 3' -64.7 NC_005259.1 + 25057 0.71 0.158678
Target:  5'- aGCCCguuuucaggcaagGgUGGCGCUGCCAcCGCCGCUg -3'
miRNA:   3'- gCGGG-------------UgGCCGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 40451 0.71 0.15908
Target:  5'- gGCCUGCCGGUgugguugacguACUGCCGG-GCCGCg -3'
miRNA:   3'- gCGGGUGGCCG-----------UGGCGGUCgUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 33121 0.71 0.160696
Target:  5'- gGgCCACgCGGCAgCCGCCGcGCgugaucuugccguagACCGCCu -3'
miRNA:   3'- gCgGGUG-GCCGU-GGCGGU-CG---------------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 48029 0.71 0.16151
Target:  5'- gCGCCCAcgauguugaccaccCCGGUggccacgGCgGgUAGCGCCGCCg -3'
miRNA:   3'- -GCGGGU--------------GGCCG-------UGgCgGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 6423 0.71 0.163149
Target:  5'- gGCCCGaccucgccgaugUCGGCACCGUcgcgcugaucggCAGCGUCGCCg -3'
miRNA:   3'- gCGGGU------------GGCCGUGGCG------------GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 60269 0.71 0.163149
Target:  5'- uGgCCACCaGCGCUGCCGG-GCgGCCa -3'
miRNA:   3'- gCgGGUGGcCGUGGCGGUCgUGgCGG- -5'
23256 3' -64.7 NC_005259.1 + 44637 0.7 0.167312
Target:  5'- gCGCCUugACCGGUGCCGCC-GC-CCGaCUc -3'
miRNA:   3'- -GCGGG--UGGCCGUGGCGGuCGuGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 27289 0.7 0.167312
Target:  5'- cCGCCgcugcacgCGCCGGaCACgGUCAGCAUCGUUg -3'
miRNA:   3'- -GCGG--------GUGGCC-GUGgCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 9681 0.7 0.171139
Target:  5'- uGCgCUGCCGGUcgaggucGCCGCUcacugGGCACCGUCc -3'
miRNA:   3'- gCG-GGUGGCCG-------UGGCGG-----UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 56114 0.7 0.171569
Target:  5'- uGgCCACCGaaACUGUguGCGCUGCCg -3'
miRNA:   3'- gCgGGUGGCcgUGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8864 0.7 0.171569
Target:  5'- uGCCCGCCGccuGCCGCacccaCGCCGCCu -3'
miRNA:   3'- gCGGGUGGCcg-UGGCGguc--GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 14319 0.7 0.175923
Target:  5'- cCGCCCucgacGCCGccGC-CCGCguGCggGCCGCCg -3'
miRNA:   3'- -GCGGG-----UGGC--CGuGGCGguCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 3291 0.7 0.175923
Target:  5'- cCGCCuCGCCGGUcccuCgGCgAGCGCUGCg -3'
miRNA:   3'- -GCGG-GUGGCCGu---GgCGgUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 48098 0.7 0.177692
Target:  5'- aGCCCGacggguCCGGUcaggaaaccgagcacACCGCCucgacCACCGCCg -3'
miRNA:   3'- gCGGGU------GGCCG---------------UGGCGGuc---GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 52207 0.7 0.180375
Target:  5'- gGCUCAUgGGCACCGCguuccGCGCCcGCUg -3'
miRNA:   3'- gCGGGUGgCCGUGGCGgu---CGUGG-CGG- -5'
23256 3' -64.7 NC_005259.1 + 28571 0.7 0.180375
Target:  5'- -aCCC-CCGcCACCGCCucuGaCGCCGCCa -3'
miRNA:   3'- gcGGGuGGCcGUGGCGGu--C-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 40563 0.7 0.184927
Target:  5'- gCGCCCGCgCGGUguuGCUGUCGGCGgcUCGCa -3'
miRNA:   3'- -GCGGGUG-GCCG---UGGCGGUCGU--GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.