miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23257 3' -59.2 NC_005259.1 + 34532 1.05 0.000759
Target:  5'- gACUGACCACCGAGGCAGCCUCAGCUUg -3'
miRNA:   3'- -UGACUGGUGGCUCCGUCGGAGUCGAA- -5'
23257 3' -59.2 NC_005259.1 + 30684 0.76 0.121691
Target:  5'- aGCUGGCCACCuGAGGCAGCacgAGCg- -3'
miRNA:   3'- -UGACUGGUGG-CUCCGUCGgagUCGaa -5'
23257 3' -59.2 NC_005259.1 + 49125 0.74 0.16811
Target:  5'- cGCUGAUCACCGGGGUcaagcuGGCCaagcagaUCGGCUa -3'
miRNA:   3'- -UGACUGGUGGCUCCG------UCGG-------AGUCGAa -5'
23257 3' -59.2 NC_005259.1 + 20164 0.73 0.192491
Target:  5'- cCUGGCCACCGcgcccGCcGCCUCGGCUg -3'
miRNA:   3'- uGACUGGUGGCuc---CGuCGGAGUCGAa -5'
23257 3' -59.2 NC_005259.1 + 8352 0.73 0.197622
Target:  5'- cGCUG-CUGCCGGuaucgcucggcGGCGGCCUCGGCa- -3'
miRNA:   3'- -UGACuGGUGGCU-----------CCGUCGGAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 58781 0.72 0.202871
Target:  5'- cGCUGugCGCCggucGAGGCGgugauuGCCUCGGCg- -3'
miRNA:   3'- -UGACugGUGG----CUCCGU------CGGAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 55033 0.71 0.249343
Target:  5'- cACgGGCUGCCGAGGUgcuuGCCUCGGUg- -3'
miRNA:   3'- -UGaCUGGUGGCUCCGu---CGGAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 35884 0.7 0.289712
Target:  5'- ---cGCCGCCGAGGCAGaCCaCGGCg- -3'
miRNA:   3'- ugacUGGUGGCUCCGUC-GGaGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 54693 0.7 0.289712
Target:  5'- --aGACCGugUCGAGGCggguGGCCUCAGCc- -3'
miRNA:   3'- ugaCUGGU--GGCUCCG----UCGGAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 33591 0.7 0.296919
Target:  5'- cGCgGGCCACCGAGGCgcGGUCg-AGCUg -3'
miRNA:   3'- -UGaCUGGUGGCUCCG--UCGGagUCGAa -5'
23257 3' -59.2 NC_005259.1 + 68623 0.68 0.368017
Target:  5'- gUUGGCCAgCCG-GGCAcCCUCGGCg- -3'
miRNA:   3'- uGACUGGU-GGCuCCGUcGGAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 31667 0.68 0.38182
Target:  5'- cUUGACCucgacgggguugcCCGAGGCAuCCUCGGCg- -3'
miRNA:   3'- uGACUGGu------------GGCUCCGUcGGAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 40884 0.68 0.394177
Target:  5'- cACcGGCCACCGuGGCGGggUCGGCa- -3'
miRNA:   3'- -UGaCUGGUGGCuCCGUCggAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 45729 0.68 0.412274
Target:  5'- cCUGcgcACCACCGAGGCcgcgcaccGCCUCGGg-- -3'
miRNA:   3'- uGAC---UGGUGGCUCCGu-------CGGAGUCgaa -5'
23257 3' -59.2 NC_005259.1 + 45006 0.68 0.412274
Target:  5'- cGCcGACCGCCGGGGCcgcGCCgccCuGCUUc -3'
miRNA:   3'- -UGaCUGGUGGCUCCGu--CGGa--GuCGAA- -5'
23257 3' -59.2 NC_005259.1 + 42539 0.68 0.412274
Target:  5'- -aUGGgCACCGAGGUGGCgggCAGCUc -3'
miRNA:   3'- ugACUgGUGGCUCCGUCGga-GUCGAa -5'
23257 3' -59.2 NC_005259.1 + 36944 0.68 0.412274
Target:  5'- uGCUG-UCACCGGGGUGcccgcgagaccGCCUCGGCc- -3'
miRNA:   3'- -UGACuGGUGGCUCCGU-----------CGGAGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 60266 0.67 0.420583
Target:  5'- gGCUGGCCACCagcgcugccGGGCGGCCaucgucgUCGGUg- -3'
miRNA:   3'- -UGACUGGUGGc--------UCCGUCGG-------AGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 48425 0.67 0.420583
Target:  5'- --cGACCGCCaccaccgaggcgcGAGGCAGCggCAGCg- -3'
miRNA:   3'- ugaCUGGUGG-------------CUCCGUCGgaGUCGaa -5'
23257 3' -59.2 NC_005259.1 + 21607 0.67 0.430875
Target:  5'- aGCUGAucuacaCCACCGAGGCuGUgUCGcGCg- -3'
miRNA:   3'- -UGACU------GGUGGCUCCGuCGgAGU-CGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.