miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23258 5' -57.5 NC_005259.1 + 15309 0.66 0.725108
Target:  5'- cUCGCcGCCCACGGucucgaCGGCGGUaCugGu -3'
miRNA:   3'- -AGUGcUGGGUGCUg-----GUCGCCA-GugCc -5'
23258 5' -57.5 NC_005259.1 + 7949 0.66 0.725108
Target:  5'- gCGCG-CCCACGGCUgcuuGGUGGccCACGc -3'
miRNA:   3'- aGUGCuGGGUGCUGG----UCGCCa-GUGCc -5'
23258 5' -57.5 NC_005259.1 + 63452 0.66 0.725108
Target:  5'- aUCGaGGCCCAUGGCCAaccGCGuGaUCGCGu -3'
miRNA:   3'- -AGUgCUGGGUGCUGGU---CGC-C-AGUGCc -5'
23258 5' -57.5 NC_005259.1 + 50963 0.66 0.725108
Target:  5'- cUCGCGuggcuguCCCACGcgGCgAGCGGUguCGa -3'
miRNA:   3'- -AGUGCu------GGGUGC--UGgUCGCCAguGCc -5'
23258 5' -57.5 NC_005259.1 + 9042 0.66 0.725108
Target:  5'- aUCAUGugCgGggcgguaacCGGCuCGGUGGUCAUGGc -3'
miRNA:   3'- -AGUGCugGgU---------GCUG-GUCGCCAGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 46515 0.66 0.725108
Target:  5'- gUACGAuCCCGCGAgC--CGGUCGgGGa -3'
miRNA:   3'- aGUGCU-GGGUGCUgGucGCCAGUgCC- -5'
23258 5' -57.5 NC_005259.1 + 57813 0.66 0.714941
Target:  5'- aCGCcGCCCGCacgcauGGCCAGauCGG-CACGGa -3'
miRNA:   3'- aGUGcUGGGUG------CUGGUC--GCCaGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 42528 0.66 0.714941
Target:  5'- gUC-CGGCCC-CGAUgGGCaccgaGGUgGCGGg -3'
miRNA:   3'- -AGuGCUGGGuGCUGgUCG-----CCAgUGCC- -5'
23258 5' -57.5 NC_005259.1 + 51086 0.66 0.7047
Target:  5'- gCAUGGCCCACGAUaacgagGGCGGgaUCugucCGGc -3'
miRNA:   3'- aGUGCUGGGUGCUGg-----UCGCC--AGu---GCC- -5'
23258 5' -57.5 NC_005259.1 + 55236 0.66 0.684035
Target:  5'- uUCGauGCCCACGACCuauGuCGGgguccacccCACGGg -3'
miRNA:   3'- -AGUgcUGGGUGCUGGu--C-GCCa--------GUGCC- -5'
23258 5' -57.5 NC_005259.1 + 46586 0.66 0.684035
Target:  5'- cCGCGccGCCCgagGCGAgCAGCGcGUCguugGCGGu -3'
miRNA:   3'- aGUGC--UGGG---UGCUgGUCGC-CAG----UGCC- -5'
23258 5' -57.5 NC_005259.1 + 60581 0.66 0.684035
Target:  5'- -gGCGGCCCACGGCgAGuCGGgugC-CGu -3'
miRNA:   3'- agUGCUGGGUGCUGgUC-GCCa--GuGCc -5'
23258 5' -57.5 NC_005259.1 + 33671 0.66 0.682997
Target:  5'- gCcCGGCCCacccuguGCGACCaAGCG-UCAUGGa -3'
miRNA:   3'- aGuGCUGGG-------UGCUGG-UCGCcAGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 49573 0.66 0.67363
Target:  5'- gUCGUGGCCa--GACCGGCGG--GCGGg -3'
miRNA:   3'- -AGUGCUGGgugCUGGUCGCCagUGCC- -5'
23258 5' -57.5 NC_005259.1 + 46646 0.67 0.663189
Target:  5'- cCAUGGCCaCACGGCU-GCGGUUGaGGu -3'
miRNA:   3'- aGUGCUGG-GUGCUGGuCGCCAGUgCC- -5'
23258 5' -57.5 NC_005259.1 + 2138 0.67 0.663189
Target:  5'- aCGCaGACCCGCacggugcuGGCCAGCGG-CGuCGa -3'
miRNA:   3'- aGUG-CUGGGUG--------CUGGUCGCCaGU-GCc -5'
23258 5' -57.5 NC_005259.1 + 50383 0.67 0.663189
Target:  5'- aCuCGGCCCACGugUcGCGGcUCGCc- -3'
miRNA:   3'- aGuGCUGGGUGCugGuCGCC-AGUGcc -5'
23258 5' -57.5 NC_005259.1 + 64075 0.67 0.652723
Target:  5'- -gGCGAUCCAcaccucacCGACCA-CGGUCAUGc -3'
miRNA:   3'- agUGCUGGGU--------GCUGGUcGCCAGUGCc -5'
23258 5' -57.5 NC_005259.1 + 65627 0.67 0.631746
Target:  5'- gCAUGGCCCAUGAUCGGCuG-CACc- -3'
miRNA:   3'- aGUGCUGGGUGCUGGUCGcCaGUGcc -5'
23258 5' -57.5 NC_005259.1 + 12222 0.67 0.631746
Target:  5'- gCACcGCCCGCuGGCCGGgcaaUGGUCACa- -3'
miRNA:   3'- aGUGcUGGGUG-CUGGUC----GCCAGUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.