Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23260 | 5' | -59.9 | NC_005259.1 | + | 55450 | 0.66 | 0.570046 |
Target: 5'- -aACGCGUacaGGGCCACCCGUGCa-- -3' miRNA: 3'- cgUGUGCGcc-CUUGGUGGGCGCGcug -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 41656 | 0.7 | 0.324288 |
Target: 5'- gGCGCucggugaGCGGGAucugcACCGCgUGCGUGGCc -3' miRNA: 3'- -CGUGug-----CGCCCU-----UGGUGgGCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 18873 | 0.7 | 0.324288 |
Target: 5'- uGCGCGCGUGGGAgGCCaACCaCGaUGuCGACc -3' miRNA: 3'- -CGUGUGCGCCCU-UGG-UGG-GC-GC-GCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 9860 | 0.7 | 0.33035 |
Target: 5'- cCAgACGCGGGAACgcgacgauguuguCGCUuuccucgCGCGCGACg -3' miRNA: 3'- cGUgUGCGCCCUUG-------------GUGG-------GCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 5652 | 0.7 | 0.339597 |
Target: 5'- aGgACG-GCGGGcGCUACaCGCGCGACa -3' miRNA: 3'- -CgUGUgCGCCCuUGGUGgGCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 4508 | 0.7 | 0.339597 |
Target: 5'- cCGCGC-CGGGAGugGCgCUGCGCGGCa -3' miRNA: 3'- cGUGUGcGCCCUUggUG-GGCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 14205 | 0.69 | 0.355423 |
Target: 5'- aGCAgGC-CGGGAucaACUACCCGgCGCG-Cg -3' miRNA: 3'- -CGUgUGcGCCCU---UGGUGGGC-GCGCuG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 6486 | 0.69 | 0.361897 |
Target: 5'- cGCuCACGCGGGuacugcuGGCCcacaucgaccgacGCCgugCGCGCGACa -3' miRNA: 3'- -CGuGUGCGCCC-------UUGG-------------UGG---GCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 53037 | 0.69 | 0.363528 |
Target: 5'- gGCAUcgugaccuCGCGGGAAaUugCUGCGUGACg -3' miRNA: 3'- -CGUGu-------GCGCCCUUgGugGGCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 6630 | 0.71 | 0.281478 |
Target: 5'- uGC-CA-GCGGGu-CCGCCCGUGaCGACa -3' miRNA: 3'- -CGuGUgCGCCCuuGGUGGGCGC-GCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 63011 | 0.71 | 0.274795 |
Target: 5'- gGCAgGCuGUGGGAACUcgauGCCCGCGagcuGACu -3' miRNA: 3'- -CGUgUG-CGCCCUUGG----UGGGCGCg---CUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 32876 | 0.72 | 0.254885 |
Target: 5'- cGCGCGCGgugaucgauucacCGGGGgcgagggugaGCCACCCggcccgcucggGCGCGGCg -3' miRNA: 3'- -CGUGUGC-------------GCCCU----------UGGUGGG-----------CGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 33122 | 0.77 | 0.106236 |
Target: 5'- gGC-CACGCGGcAGCCGCCgCGCGUGAUc -3' miRNA: 3'- -CGuGUGCGCCcUUGGUGG-GCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 4426 | 0.76 | 0.128049 |
Target: 5'- cCGCGCGCccgaGGucGAGCCGCCCGUGCGAg -3' miRNA: 3'- cGUGUGCG----CC--CUUGGUGGGCGCGCUg -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 25942 | 0.75 | 0.149972 |
Target: 5'- aGCGCACGCcGGuGCCcgGCCCGC-CGACg -3' miRNA: 3'- -CGUGUGCGcCCuUGG--UGGGCGcGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 36506 | 0.75 | 0.153942 |
Target: 5'- aGCuCugGCGuguccuuGAACCACCCGCGCGGu -3' miRNA: 3'- -CGuGugCGCc------CUUGGUGGGCGCGCUg -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 66229 | 0.74 | 0.184493 |
Target: 5'- cGCACACGCGGucgugcAGCCAUCgacgcaGCGCGGCc -3' miRNA: 3'- -CGUGUGCGCCc-----UUGGUGGg-----CGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 36864 | 0.74 | 0.189272 |
Target: 5'- uGCGCcguUGCuGGcACCGCCCGCGcCGACg -3' miRNA: 3'- -CGUGu--GCGcCCuUGGUGGGCGC-GCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 3125 | 0.73 | 0.209486 |
Target: 5'- gGCAC-CGUGGGcAgcggacggcACCGCCCGUGgGACu -3' miRNA: 3'- -CGUGuGCGCCC-U---------UGGUGGGCGCgCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 2949 | 0.73 | 0.214823 |
Target: 5'- -gGCGCGCGaGAcccugGCCACCgCGCGCGAa -3' miRNA: 3'- cgUGUGCGCcCU-----UGGUGG-GCGCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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