Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23263 | 3' | -58.5 | NC_005259.1 | + | 34210 | 0.67 | 0.606548 |
Target: 5'- uGUUGGUuugaaugucCCCGGCGCugCcggucuuGCCGUUGAa -3' miRNA: 3'- cCAGCUA---------GGGCUGCGugG-------CGGCAGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 35502 | 0.71 | 0.369865 |
Target: 5'- gGGUUGGcCCCGuuGcCGCCGCCGcCGGg -3' miRNA: 3'- -CCAGCUaGGGCugC-GUGGCGGCaGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 36743 | 0.67 | 0.632494 |
Target: 5'- cGGgauacgUGAUCCCGuugaGCGUgacguuaggcgcguuGCCGCCGUCc- -3' miRNA: 3'- -CCa-----GCUAGGGC----UGCG---------------UGGCGGCAGcu -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 37629 | 0.66 | 0.680131 |
Target: 5'- gGGaUGAUgugcugCCCGAugacCGCACCGCCGcCGc -3' miRNA: 3'- -CCaGCUA------GGGCU----GCGUGGCGGCaGCu -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 37722 | 0.74 | 0.267312 |
Target: 5'- ---aGA-CCCGAgGCACCGCCGcCGAc -3' miRNA: 3'- ccagCUaGGGCUgCGUGGCGGCaGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 38058 | 0.68 | 0.556155 |
Target: 5'- --cCGAUCCugcCGACGaGCCGCCaUCGAg -3' miRNA: 3'- ccaGCUAGG---GCUGCgUGGCGGcAGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 38930 | 0.66 | 0.659473 |
Target: 5'- cGUCGGUguugcugugCCCGGUGcCGCUGCCGcCGAg -3' miRNA: 3'- cCAGCUA---------GGGCUGC-GUGGCGGCaGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 39150 | 0.68 | 0.546004 |
Target: 5'- --gUGAUCgCCGACGUugaaACCGCCGaacacgUCGAg -3' miRNA: 3'- ccaGCUAG-GGCUGCG----UGGCGGC------AGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 41014 | 0.7 | 0.412477 |
Target: 5'- gGGcCGGUCCacaguGugGUGCCGCUGUCa- -3' miRNA: 3'- -CCaGCUAGGg----CugCGUGGCGGCAGcu -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 41240 | 0.69 | 0.476938 |
Target: 5'- cGGUgaCGAUCCgGuGCGCcucACCGCCccgGUCGAg -3' miRNA: 3'- -CCA--GCUAGGgC-UGCG---UGGCGG---CAGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 41319 | 0.72 | 0.330363 |
Target: 5'- aGGUCGAcCUCGAaaaggGCGgUGCCGUCGGa -3' miRNA: 3'- -CCAGCUaGGGCUg----CGUgGCGGCAGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 42204 | 0.74 | 0.242567 |
Target: 5'- cGUCGcgauggaugCCCGcCGCGCCGCCGUCc- -3' miRNA: 3'- cCAGCua-------GGGCuGCGUGGCGGCAGcu -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 44160 | 0.67 | 0.586905 |
Target: 5'- cGGUCGAgCa--GCGCGCCGgUGUCGGa -3' miRNA: 3'- -CCAGCUaGggcUGCGUGGCgGCAGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 44228 | 0.7 | 0.430352 |
Target: 5'- -uUCGAgcucgCCCGcCGCGCCGCCcgcgcgcgagaaGUCGGc -3' miRNA: 3'- ccAGCUa----GGGCuGCGUGGCGG------------CAGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 44986 | 0.69 | 0.476938 |
Target: 5'- cGGUgCGAcUgCCGAgGCACCGCCGa--- -3' miRNA: 3'- -CCA-GCU-AgGGCUgCGUGGCGGCagcu -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 45613 | 0.73 | 0.280432 |
Target: 5'- -cUCGGUCUCGAUGC-CCGCCGggcCGGg -3' miRNA: 3'- ccAGCUAGGGCUGCGuGGCGGCa--GCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 45740 | 0.66 | 0.638726 |
Target: 5'- --cCGAggCCG-CGCACCGCC-UCGGg -3' miRNA: 3'- ccaGCUagGGCuGCGUGGCGGcAGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 46663 | 0.67 | 0.625224 |
Target: 5'- cGGUUGAgguUCUCGGCGagcucggccugagcCGCCGCCGcgucccUCGAc -3' miRNA: 3'- -CCAGCU---AGGGCUGC--------------GUGGCGGC------AGCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 46868 | 0.74 | 0.236686 |
Target: 5'- cGGUCGAggCuuGAauCGCGCCGCCGcccgCGAu -3' miRNA: 3'- -CCAGCUa-GggCU--GCGUGGCGGCa---GCU- -5' |
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23263 | 3' | -58.5 | NC_005259.1 | + | 46930 | 0.67 | 0.576612 |
Target: 5'- cGcCGAgcuugCCCGcCGCGCCGCCGa--- -3' miRNA: 3'- cCaGCUa----GGGCuGCGUGGCGGCagcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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