miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 20600 0.68 0.515935
Target:  5'- aGUCGGaCUaugCGGCGCACCGCgaccgUGUCGAu -3'
miRNA:   3'- cCAGCUaGG---GCUGCGUGGCG-----GCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 21055 0.7 0.430352
Target:  5'- aGGUCGccgCCaucgugugGACGCguauGCCGCUGUCGAc -3'
miRNA:   3'- -CCAGCua-GGg-------CUGCG----UGGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 21478 0.71 0.378143
Target:  5'- aGcCGAUCCgCGAacUGCACCGCCcUCGGu -3'
miRNA:   3'- cCaGCUAGG-GCU--GCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 22005 0.7 0.421357
Target:  5'- aGUCGAcggUCaUCGGuCGCACUGCCGUCa- -3'
miRNA:   3'- cCAGCU---AG-GGCU-GCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 22126 0.67 0.617957
Target:  5'- -cUCGAUCCCG-CGCAgCCa-CGUCGGc -3'
miRNA:   3'- ccAGCUAGGGCuGCGU-GGcgGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 22209 0.7 0.421357
Target:  5'- cGUUGGcCaCCG-CGCACCGCCG-CGAg -3'
miRNA:   3'- cCAGCUaG-GGCuGCGUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 22647 0.76 0.178244
Target:  5'- cGGUCGAcgccgcccaccacaUCgCCGACGCacugACCGCCGcCGAu -3'
miRNA:   3'- -CCAGCU--------------AG-GGCUGCG----UGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 23035 0.66 0.649107
Target:  5'- -aUCGAaCCCGACGacgaGCUGCCcggCGAg -3'
miRNA:   3'- ccAGCUaGGGCUGCg---UGGCGGca-GCU- -5'
23263 3' -58.5 NC_005259.1 + 23899 0.7 0.430352
Target:  5'- --cCGAg-CCGcCGCGcCCGCCGUCGAa -3'
miRNA:   3'- ccaGCUagGGCuGCGU-GGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 25118 0.66 0.649107
Target:  5'- aGGUCGAccccgccgaccUCCcCGACGUgACCaaCGUCGGu -3'
miRNA:   3'- -CCAGCU-----------AGG-GCUGCG-UGGcgGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 25170 0.68 0.546004
Target:  5'- cGUUGggUCCGACccguaCGCCGCCGcCGAu -3'
miRNA:   3'- cCAGCuaGGGCUGc----GUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 26397 0.72 0.3221
Target:  5'- --gCGAUUCCGACGCcgggcgcggcgguGCCGCCGUaGAa -3'
miRNA:   3'- ccaGCUAGGGCUGCG-------------UGGCGGCAgCU- -5'
23263 3' -58.5 NC_005259.1 + 27512 0.74 0.236686
Target:  5'- aGGUCGA-CgUGucCGCACaCGCCGUCGAg -3'
miRNA:   3'- -CCAGCUaGgGCu-GCGUG-GCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 28156 0.67 0.62834
Target:  5'- --cCGGcCUCGACGCGCUGCCcUUGAc -3'
miRNA:   3'- ccaGCUaGGGCUGCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 28641 0.66 0.680131
Target:  5'- --cCGGUgCCGAcacCGCcgagGCCGCCGUCa- -3'
miRNA:   3'- ccaGCUAgGGCU---GCG----UGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 28948 0.69 0.506059
Target:  5'- --aCGAUCCUGcgcCGCAUCGCCGaggUCGGu -3'
miRNA:   3'- ccaGCUAGGGCu--GCGUGGCGGC---AGCU- -5'
23263 3' -58.5 NC_005259.1 + 29674 0.68 0.525888
Target:  5'- -cUCGuugCCgGACGCGCCGCaaUCGAg -3'
miRNA:   3'- ccAGCua-GGgCUGCGUGGCGgcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 30714 0.66 0.659473
Target:  5'- uGUUGccgCCGACGCGCCGCaCGagCGAu -3'
miRNA:   3'- cCAGCuagGGCUGCGUGGCG-GCa-GCU- -5'
23263 3' -58.5 NC_005259.1 + 30817 0.74 0.260941
Target:  5'- aGUCGGguagUCCGGCGCGCCGagGUCGGc -3'
miRNA:   3'- cCAGCUa---GGGCUGCGUGGCggCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 32807 1.1 0.000698
Target:  5'- aGGUCGAUCCCGACGCACCGCCGUCGAu -3'
miRNA:   3'- -CCAGCUAGGGCUGCGUGGCGGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.