miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 35502 0.71 0.369865
Target:  5'- gGGUUGGcCCCGuuGcCGCCGCCGcCGGg -3'
miRNA:   3'- -CCAGCUaGGGCugC-GUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 20087 0.71 0.369865
Target:  5'- cGUCGAaaccaccgaCCCGugGUgaGCCGCCGUCu- -3'
miRNA:   3'- cCAGCUa--------GGGCugCG--UGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 21478 0.71 0.378143
Target:  5'- aGcCGAUCCgCGAacUGCACCGCCcUCGGu -3'
miRNA:   3'- cCaGCUAGG-GCU--GCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 49235 0.71 0.386545
Target:  5'- cGUCGGaCUCGAC-CGCUGCCGUCa- -3'
miRNA:   3'- cCAGCUaGGGCUGcGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 58176 0.7 0.403714
Target:  5'- ---gGAUCUCGACGCacgucuugACCGCCGUgGGc -3'
miRNA:   3'- ccagCUAGGGCUGCG--------UGGCGGCAgCU- -5'
23263 3' -58.5 NC_005259.1 + 41014 0.7 0.412477
Target:  5'- gGGcCGGUCCacaguGugGUGCCGCUGUCa- -3'
miRNA:   3'- -CCaGCUAGGg----CugCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 6894 0.7 0.412477
Target:  5'- cGUCG--CCCGcaacgcACGCGCCGCCGccaUCGAg -3'
miRNA:   3'- cCAGCuaGGGC------UGCGUGGCGGC---AGCU- -5'
23263 3' -58.5 NC_005259.1 + 22005 0.7 0.421357
Target:  5'- aGUCGAcggUCaUCGGuCGCACUGCCGUCa- -3'
miRNA:   3'- cCAGCU---AG-GGCU-GCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 22209 0.7 0.421357
Target:  5'- cGUUGGcCaCCG-CGCACCGCCG-CGAg -3'
miRNA:   3'- cCAGCUaG-GGCuGCGUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 21055 0.7 0.430352
Target:  5'- aGGUCGccgCCaucgugugGACGCguauGCCGCUGUCGAc -3'
miRNA:   3'- -CCAGCua-GGg-------CUGCG----UGGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 23899 0.7 0.430352
Target:  5'- --cCGAg-CCGcCGCGcCCGCCGUCGAa -3'
miRNA:   3'- ccaGCUagGGCuGCGU-GGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 44228 0.7 0.430352
Target:  5'- -uUCGAgcucgCCCGcCGCGCCGCCcgcgcgcgagaaGUCGGc -3'
miRNA:   3'- ccAGCUa----GGGCuGCGUGGCGG------------CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 12152 0.7 0.430352
Target:  5'- -cUUGAUCaccgCCGACgGCACCGCCcucgGUCGAa -3'
miRNA:   3'- ccAGCUAG----GGCUG-CGUGGCGG----CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 9657 0.7 0.439457
Target:  5'- cGUCGGUaugCCCGuuguuccacAUGCGCUGCCgGUCGAg -3'
miRNA:   3'- cCAGCUA---GGGC---------UGCGUGGCGG-CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 12316 0.7 0.448672
Target:  5'- uGUCGGUgcgcaCCGccgccagcucACGCACCGCCGccUCGAa -3'
miRNA:   3'- cCAGCUAg----GGC----------UGCGUGGCGGC--AGCU- -5'
23263 3' -58.5 NC_005259.1 + 17359 0.69 0.457993
Target:  5'- aGGUCGGcggCUCGGCGCuggUCGUgGUCGAc -3'
miRNA:   3'- -CCAGCUa--GGGCUGCGu--GGCGgCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 44986 0.69 0.476938
Target:  5'- cGGUgCGAcUgCCGAgGCACCGCCGa--- -3'
miRNA:   3'- -CCA-GCU-AgGGCUgCGUGGCGGCagcu -5'
23263 3' -58.5 NC_005259.1 + 41240 0.69 0.476938
Target:  5'- cGGUgaCGAUCCgGuGCGCcucACCGCCccgGUCGAg -3'
miRNA:   3'- -CCA--GCUAGGgC-UGCG---UGGCGG---CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 28948 0.69 0.506059
Target:  5'- --aCGAUCCUGcgcCGCAUCGCCGaggUCGGu -3'
miRNA:   3'- ccaGCUAGGGCu--GCGUGGCGGC---AGCU- -5'
23263 3' -58.5 NC_005259.1 + 20600 0.68 0.515935
Target:  5'- aGUCGGaCUaugCGGCGCACCGCgaccgUGUCGAu -3'
miRNA:   3'- cCAGCUaGG---GCUGCGUGGCG-----GCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.