miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 5402 0.67 0.62834
Target:  5'- cGUCGucaucaCCCG-CGCugGCCGCCacGUCGAg -3'
miRNA:   3'- cCAGCua----GGGCuGCG--UGGCGG--CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 46663 0.67 0.625224
Target:  5'- cGGUUGAgguUCUCGGCGagcucggccugagcCGCCGCCGcgucccUCGAc -3'
miRNA:   3'- -CCAGCU---AGGGCUGC--------------GUGGCGGC------AGCU- -5'
23263 3' -58.5 NC_005259.1 + 22126 0.67 0.617957
Target:  5'- -cUCGAUCCCG-CGCAgCCa-CGUCGGc -3'
miRNA:   3'- ccAGCUAGGGCuGCGU-GGcgGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 66042 0.67 0.607585
Target:  5'- --gCGAgCUCGACGUagacGCCGCCGUgGGc -3'
miRNA:   3'- ccaGCUaGGGCUGCG----UGGCGGCAgCU- -5'
23263 3' -58.5 NC_005259.1 + 16458 0.67 0.607585
Target:  5'- cGGcaUCGGUacCCCGcCGCAgaUCGCCGUCa- -3'
miRNA:   3'- -CC--AGCUA--GGGCuGCGU--GGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 7308 0.67 0.607585
Target:  5'- -aUUGGgugCCCGAguuCACCGCCGUCGc -3'
miRNA:   3'- ccAGCUa--GGGCUgc-GUGGCGGCAGCu -5'
23263 3' -58.5 NC_005259.1 + 34210 0.67 0.606548
Target:  5'- uGUUGGUuugaaugucCCCGGCGCugCcggucuuGCCGUUGAa -3'
miRNA:   3'- cCAGCUA---------GGGCUGCGugG-------CGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 53168 0.67 0.597232
Target:  5'- aGGcCGAUCUCGccAC-CGCCGCCcGUCGc -3'
miRNA:   3'- -CCaGCUAGGGC--UGcGUGGCGG-CAGCu -5'
23263 3' -58.5 NC_005259.1 + 44160 0.67 0.586905
Target:  5'- cGGUCGAgCa--GCGCGCCGgUGUCGGa -3'
miRNA:   3'- -CCAGCUaGggcUGCGUGGCgGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 48483 0.67 0.586905
Target:  5'- cGUCGGccuguUCCuCGACGCGCUugaggGCCG-CGAc -3'
miRNA:   3'- cCAGCU-----AGG-GCUGCGUGG-----CGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 46930 0.67 0.576612
Target:  5'- cGcCGAgcuugCCCGcCGCGCCGCCGa--- -3'
miRNA:   3'- cCaGCUa----GGGCuGCGUGGCGGCagcu -5'
23263 3' -58.5 NC_005259.1 + 12199 0.68 0.566359
Target:  5'- uGGUCGuguagagaugCaCCGGCGCACCGCCc---- -3'
miRNA:   3'- -CCAGCua--------G-GGCUGCGUGGCGGcagcu -5'
23263 3' -58.5 NC_005259.1 + 60530 0.68 0.566359
Target:  5'- uGGcCGggCCgGgACGCAgCCGCuCGUCGGc -3'
miRNA:   3'- -CCaGCuaGGgC-UGCGU-GGCG-GCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 38058 0.68 0.556155
Target:  5'- --cCGAUCCugcCGACGaGCCGCCaUCGAg -3'
miRNA:   3'- ccaGCUAGG---GCUGCgUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 25170 0.68 0.546004
Target:  5'- cGUUGggUCCGACccguaCGCCGCCGcCGAu -3'
miRNA:   3'- cCAGCuaGGGCUGc----GUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 39150 0.68 0.546004
Target:  5'- --gUGAUCgCCGACGUugaaACCGCCGaacacgUCGAg -3'
miRNA:   3'- ccaGCUAG-GGCUGCG----UGGCGGC------AGCU- -5'
23263 3' -58.5 NC_005259.1 + 9957 0.68 0.535913
Target:  5'- -aUCGAgccgaccgCCCGAC-CACCGCaccgGUCGAg -3'
miRNA:   3'- ccAGCUa-------GGGCUGcGUGGCGg---CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 17885 0.68 0.525888
Target:  5'- cGGUUGGaCCCc-CGCACCGCgCGcCGAu -3'
miRNA:   3'- -CCAGCUaGGGcuGCGUGGCG-GCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 29674 0.68 0.525888
Target:  5'- -cUCGuugCCgGACGCGCCGCaaUCGAg -3'
miRNA:   3'- ccAGCua-GGgCUGCGUGGCGgcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 20600 0.68 0.515935
Target:  5'- aGUCGGaCUaugCGGCGCACCGCgaccgUGUCGAu -3'
miRNA:   3'- cCAGCUaGG---GCUGCGUGGCG-----GCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.