miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 47952 0.66 0.658438
Target:  5'- cGG-CGGUgCCGAuggccgcCGCGCCGcCCG-CGAa -3'
miRNA:   3'- -CCaGCUAgGGCU-------GCGUGGC-GGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 37629 0.66 0.680131
Target:  5'- gGGaUGAUgugcugCCCGAugacCGCACCGCCGcCGc -3'
miRNA:   3'- -CCaGCUA------GGGCU----GCGUGGCGGCaGCu -5'
23263 3' -58.5 NC_005259.1 + 28641 0.66 0.680131
Target:  5'- --cCGGUgCCGAcacCGCcgagGCCGCCGUCa- -3'
miRNA:   3'- ccaGCUAgGGCU---GCG----UGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 55753 0.66 0.669818
Target:  5'- uGUCGAgaCCGuGCGCAgCCGCguacgCGUCGAg -3'
miRNA:   3'- cCAGCUagGGC-UGCGU-GGCG-----GCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 52106 0.66 0.669818
Target:  5'- aGG-CGGcaaCCUGAgcggcaaucucCGCACCGCCGUCc- -3'
miRNA:   3'- -CCaGCUa--GGGCU-----------GCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 16688 0.66 0.669818
Target:  5'- cGG-CGAUCCUGG-GCACCGaggugaCCGcCGAg -3'
miRNA:   3'- -CCaGCUAGGGCUgCGUGGC------GGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 52773 0.66 0.659473
Target:  5'- cGUCGGUgUCGGCaGCgugUGCCGUCGAc -3'
miRNA:   3'- cCAGCUAgGGCUG-CGug-GCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 30714 0.66 0.659473
Target:  5'- uGUUGccgCCGACGCGCCGCaCGagCGAu -3'
miRNA:   3'- cCAGCuagGGCUGCGUGGCG-GCa-GCU- -5'
23263 3' -58.5 NC_005259.1 + 38930 0.66 0.659473
Target:  5'- cGUCGGUguugcugugCCCGGUGcCGCUGCCGcCGAg -3'
miRNA:   3'- cCAGCUA---------GGGCUGC-GUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 47552 0.66 0.659473
Target:  5'- cGGUCGaAUUgCGuuguucGCGCGCUGCUGUCc- -3'
miRNA:   3'- -CCAGC-UAGgGC------UGCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 20600 0.68 0.515935
Target:  5'- aGUCGGaCUaugCGGCGCACCGCgaccgUGUCGAu -3'
miRNA:   3'- cCAGCUaGG---GCUGCGUGGCG-----GCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 23035 0.66 0.649107
Target:  5'- -aUCGAaCCCGACGacgaGCUGCCcggCGAg -3'
miRNA:   3'- ccAGCUaGGGCUGCg---UGGCGGca-GCU- -5'
23263 3' -58.5 NC_005259.1 + 67222 0.66 0.649107
Target:  5'- gGGUCGAUgCCGAC-CACgGCgGUg-- -3'
miRNA:   3'- -CCAGCUAgGGCUGcGUGgCGgCAgcu -5'
23263 3' -58.5 NC_005259.1 + 25118 0.66 0.649107
Target:  5'- aGGUCGAccccgccgaccUCCcCGACGUgACCaaCGUCGGu -3'
miRNA:   3'- -CCAGCU-----------AGG-GCUGCG-UGGcgGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 425 0.66 0.638726
Target:  5'- cGUCGAggaUGACGCACCGaucuaCGUCa- -3'
miRNA:   3'- cCAGCUaggGCUGCGUGGCg----GCAGcu -5'
23263 3' -58.5 NC_005259.1 + 48600 0.66 0.638726
Target:  5'- uGUCGAgCgCgGGCGCuACCGCCGUgCGc -3'
miRNA:   3'- cCAGCUaG-GgCUGCG-UGGCGGCA-GCu -5'
23263 3' -58.5 NC_005259.1 + 47367 0.66 0.638726
Target:  5'- aGGaUCGuguUgCCGaACGCACgcgCGCCGUUGAg -3'
miRNA:   3'- -CC-AGCu--AgGGC-UGCGUG---GCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 45740 0.66 0.638726
Target:  5'- --cCGAggCCG-CGCACCGCC-UCGGg -3'
miRNA:   3'- ccaGCUagGGCuGCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 65793 0.66 0.637687
Target:  5'- --aUGGcCUCGACGCGCUggucgaaacgcugGCCGUCGAc -3'
miRNA:   3'- ccaGCUaGGGCUGCGUGG-------------CGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 36743 0.67 0.632494
Target:  5'- cGGgauacgUGAUCCCGuugaGCGUgacguuaggcgcguuGCCGCCGUCc- -3'
miRNA:   3'- -CCa-----GCUAGGGC----UGCG---------------UGGCGGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.