miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 46868 0.74 0.236686
Target:  5'- cGGUCGAggCuuGAauCGCGCCGCCGcccgCGAu -3'
miRNA:   3'- -CCAGCUa-GggCU--GCGUGGCGGCa---GCU- -5'
23263 3' -58.5 NC_005259.1 + 27512 0.74 0.236686
Target:  5'- aGGUCGA-CgUGucCGCACaCGCCGUCGAg -3'
miRNA:   3'- -CCAGCUaGgGCu-GCGUG-GCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 58695 0.75 0.219759
Target:  5'- gGGUCGG-CUCGuCGcCGCCGCCGUCa- -3'
miRNA:   3'- -CCAGCUaGGGCuGC-GUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 22647 0.76 0.178244
Target:  5'- cGGUCGAcgccgcccaccacaUCgCCGACGCacugACCGCCGcCGAu -3'
miRNA:   3'- -CCAGCU--------------AG-GGCUGCG----UGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 48390 0.78 0.135087
Target:  5'- uGUCGuugcCgCCGACGC-CCGCCGUCGAg -3'
miRNA:   3'- cCAGCua--G-GGCUGCGuGGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 18186 0.72 0.308195
Target:  5'- aGGUCGAcCCCGAcauCGCACCcaaGCagGUCGAc -3'
miRNA:   3'- -CCAGCUaGGGCU---GCGUGG---CGg-CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 26397 0.72 0.3221
Target:  5'- --gCGAUUCCGACGCcgggcgcggcgguGCCGCCGUaGAa -3'
miRNA:   3'- ccaGCUAGGGCUGCG-------------UGGCGGCAgCU- -5'
23263 3' -58.5 NC_005259.1 + 22209 0.7 0.421357
Target:  5'- cGUUGGcCaCCG-CGCACCGCCG-CGAg -3'
miRNA:   3'- cCAGCUaG-GGCuGCGUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 22005 0.7 0.421357
Target:  5'- aGUCGAcggUCaUCGGuCGCACUGCCGUCa- -3'
miRNA:   3'- cCAGCU---AG-GGCU-GCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 6894 0.7 0.412477
Target:  5'- cGUCG--CCCGcaacgcACGCGCCGCCGccaUCGAg -3'
miRNA:   3'- cCAGCuaGGGC------UGCGUGGCGGC---AGCU- -5'
23263 3' -58.5 NC_005259.1 + 41014 0.7 0.412477
Target:  5'- gGGcCGGUCCacaguGugGUGCCGCUGUCa- -3'
miRNA:   3'- -CCaGCUAGGg----CugCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 58176 0.7 0.403714
Target:  5'- ---gGAUCUCGACGCacgucuugACCGCCGUgGGc -3'
miRNA:   3'- ccagCUAGGGCUGCG--------UGGCGGCAgCU- -5'
23263 3' -58.5 NC_005259.1 + 49235 0.71 0.386545
Target:  5'- cGUCGGaCUCGAC-CGCUGCCGUCa- -3'
miRNA:   3'- cCAGCUaGGGCUGcGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 21478 0.71 0.378143
Target:  5'- aGcCGAUCCgCGAacUGCACCGCCcUCGGu -3'
miRNA:   3'- cCaGCUAGG-GCU--GCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 35502 0.71 0.369865
Target:  5'- gGGUUGGcCCCGuuGcCGCCGCCGcCGGg -3'
miRNA:   3'- -CCAGCUaGGGCugC-GUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 20087 0.71 0.369865
Target:  5'- cGUCGAaaccaccgaCCCGugGUgaGCCGCCGUCu- -3'
miRNA:   3'- cCAGCUa--------GGGCugCG--UGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 10543 0.71 0.353683
Target:  5'- gGGUCGAUCUucuggaugugcuCGAucaauCGCGCCGCC-UCGAc -3'
miRNA:   3'- -CCAGCUAGG------------GCU-----GCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 10736 0.71 0.353683
Target:  5'- cGGU-GAUCaCCG-CGCGCUGCCGggCGAu -3'
miRNA:   3'- -CCAgCUAG-GGCuGCGUGGCGGCa-GCU- -5'
23263 3' -58.5 NC_005259.1 + 41319 0.72 0.330363
Target:  5'- aGGUCGAcCUCGAaaaggGCGgUGCCGUCGGa -3'
miRNA:   3'- -CCAGCUaGGGCUg----CGUgGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 18286 0.72 0.322845
Target:  5'- -cUCGAcgCCCGACGaGCCGCCGUUc- -3'
miRNA:   3'- ccAGCUa-GGGCUGCgUGGCGGCAGcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.