miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 425 0.66 0.638726
Target:  5'- cGUCGAggaUGACGCACCGaucuaCGUCa- -3'
miRNA:   3'- cCAGCUaggGCUGCGUGGCg----GCAGcu -5'
23263 3' -58.5 NC_005259.1 + 5402 0.67 0.62834
Target:  5'- cGUCGucaucaCCCG-CGCugGCCGCCacGUCGAg -3'
miRNA:   3'- cCAGCua----GGGCuGCG--UGGCGG--CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 6253 0.73 0.285143
Target:  5'- gGGUCGAuaUCCCGcAC-CGCCGCCGcgccuaccucguggUCGAg -3'
miRNA:   3'- -CCAGCU--AGGGC-UGcGUGGCGGC--------------AGCU- -5'
23263 3' -58.5 NC_005259.1 + 6894 0.7 0.412477
Target:  5'- cGUCG--CCCGcaacgcACGCGCCGCCGccaUCGAg -3'
miRNA:   3'- cCAGCuaGGGC------UGCGUGGCGGC---AGCU- -5'
23263 3' -58.5 NC_005259.1 + 7308 0.67 0.607585
Target:  5'- -aUUGGgugCCCGAguuCACCGCCGUCGc -3'
miRNA:   3'- ccAGCUa--GGGCUgc-GUGGCGGCAGCu -5'
23263 3' -58.5 NC_005259.1 + 9657 0.7 0.439457
Target:  5'- cGUCGGUaugCCCGuuguuccacAUGCGCUGCCgGUCGAg -3'
miRNA:   3'- cCAGCUA---GGGC---------UGCGUGGCGG-CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 9957 0.68 0.535913
Target:  5'- -aUCGAgccgaccgCCCGAC-CACCGCaccgGUCGAg -3'
miRNA:   3'- ccAGCUa-------GGGCUGcGUGGCGg---CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 10543 0.71 0.353683
Target:  5'- gGGUCGAUCUucuggaugugcuCGAucaauCGCGCCGCC-UCGAc -3'
miRNA:   3'- -CCAGCUAGG------------GCU-----GCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 10736 0.71 0.353683
Target:  5'- cGGU-GAUCaCCG-CGCGCUGCCGggCGAu -3'
miRNA:   3'- -CCAgCUAG-GGCuGCGUGGCGGCa-GCU- -5'
23263 3' -58.5 NC_005259.1 + 12152 0.7 0.430352
Target:  5'- -cUUGAUCaccgCCGACgGCACCGCCcucgGUCGAa -3'
miRNA:   3'- ccAGCUAG----GGCUG-CGUGGCGG----CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 12199 0.68 0.566359
Target:  5'- uGGUCGuguagagaugCaCCGGCGCACCGCCc---- -3'
miRNA:   3'- -CCAGCua--------G-GGCUGCGUGGCGGcagcu -5'
23263 3' -58.5 NC_005259.1 + 12316 0.7 0.448672
Target:  5'- uGUCGGUgcgcaCCGccgccagcucACGCACCGCCGccUCGAa -3'
miRNA:   3'- cCAGCUAg----GGC----------UGCGUGGCGGC--AGCU- -5'
23263 3' -58.5 NC_005259.1 + 16458 0.67 0.607585
Target:  5'- cGGcaUCGGUacCCCGcCGCAgaUCGCCGUCa- -3'
miRNA:   3'- -CC--AGCUA--GGGCuGCGU--GGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 16688 0.66 0.669818
Target:  5'- cGG-CGAUCCUGG-GCACCGaggugaCCGcCGAg -3'
miRNA:   3'- -CCaGCUAGGGCUgCGUGGC------GGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 17359 0.69 0.457993
Target:  5'- aGGUCGGcggCUCGGCGCuggUCGUgGUCGAc -3'
miRNA:   3'- -CCAGCUa--GGGCUGCGu--GGCGgCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 17721 0.73 0.294058
Target:  5'- --cCGAUCaCCGACGCACCGUgGcugcUCGAc -3'
miRNA:   3'- ccaGCUAG-GGCUGCGUGGCGgC----AGCU- -5'
23263 3' -58.5 NC_005259.1 + 17885 0.68 0.525888
Target:  5'- cGGUUGGaCCCc-CGCACCGCgCGcCGAu -3'
miRNA:   3'- -CCAGCUaGGGcuGCGUGGCG-GCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 18186 0.72 0.308195
Target:  5'- aGGUCGAcCCCGAcauCGCACCcaaGCagGUCGAc -3'
miRNA:   3'- -CCAGCUaGGGCU---GCGUGG---CGg-CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 18286 0.72 0.322845
Target:  5'- -cUCGAcgCCCGACGaGCCGCCGUUc- -3'
miRNA:   3'- ccAGCUa-GGGCUGCgUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 20087 0.71 0.369865
Target:  5'- cGUCGAaaccaccgaCCCGugGUgaGCCGCCGUCu- -3'
miRNA:   3'- cCAGCUa--------GGGCugCG--UGGCGGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.