miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 67222 0.66 0.649107
Target:  5'- gGGUCGAUgCCGAC-CACgGCgGUg-- -3'
miRNA:   3'- -CCAGCUAgGGCUGcGUGgCGgCAgcu -5'
23263 3' -58.5 NC_005259.1 + 66217 0.74 0.248569
Target:  5'- cGGUCGcg-CCGACGCACaCGCgGUCGu -3'
miRNA:   3'- -CCAGCuagGGCUGCGUG-GCGgCAGCu -5'
23263 3' -58.5 NC_005259.1 + 66042 0.67 0.607585
Target:  5'- --gCGAgCUCGACGUagacGCCGCCGUgGGc -3'
miRNA:   3'- ccaGCUaGGGCUGCG----UGGCGGCAgCU- -5'
23263 3' -58.5 NC_005259.1 + 65793 0.66 0.637687
Target:  5'- --aUGGcCUCGACGCGCUggucgaaacgcugGCCGUCGAc -3'
miRNA:   3'- ccaGCUaGGGCUGCGUGG-------------CGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 60530 0.68 0.566359
Target:  5'- uGGcCGggCCgGgACGCAgCCGCuCGUCGGc -3'
miRNA:   3'- -CCaGCuaGGgC-UGCGU-GGCG-GCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 58695 0.75 0.219759
Target:  5'- gGGUCGG-CUCGuCGcCGCCGCCGUCa- -3'
miRNA:   3'- -CCAGCUaGGGCuGC-GUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 58176 0.7 0.403714
Target:  5'- ---gGAUCUCGACGCacgucuugACCGCCGUgGGc -3'
miRNA:   3'- ccagCUAGGGCUGCG--------UGGCGGCAgCU- -5'
23263 3' -58.5 NC_005259.1 + 55753 0.66 0.669818
Target:  5'- uGUCGAgaCCGuGCGCAgCCGCguacgCGUCGAg -3'
miRNA:   3'- cCAGCUagGGC-UGCGU-GGCG-----GCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 53168 0.67 0.597232
Target:  5'- aGGcCGAUCUCGccAC-CGCCGCCcGUCGc -3'
miRNA:   3'- -CCaGCUAGGGC--UGcGUGGCGG-CAGCu -5'
23263 3' -58.5 NC_005259.1 + 52773 0.66 0.659473
Target:  5'- cGUCGGUgUCGGCaGCgugUGCCGUCGAc -3'
miRNA:   3'- cCAGCUAgGGCUG-CGug-GCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 52106 0.66 0.669818
Target:  5'- aGG-CGGcaaCCUGAgcggcaaucucCGCACCGCCGUCc- -3'
miRNA:   3'- -CCaGCUa--GGGCU-----------GCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 50680 0.73 0.294058
Target:  5'- cGUCGGUgCCGACgagGCGCUGCuCGUCGu -3'
miRNA:   3'- cCAGCUAgGGCUG---CGUGGCG-GCAGCu -5'
23263 3' -58.5 NC_005259.1 + 49235 0.71 0.386545
Target:  5'- cGUCGGaCUCGAC-CGCUGCCGUCa- -3'
miRNA:   3'- cCAGCUaGGGCUGcGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 48600 0.66 0.638726
Target:  5'- uGUCGAgCgCgGGCGCuACCGCCGUgCGc -3'
miRNA:   3'- cCAGCUaG-GgCUGCG-UGGCGGCA-GCu -5'
23263 3' -58.5 NC_005259.1 + 48483 0.67 0.586905
Target:  5'- cGUCGGccuguUCCuCGACGCGCUugaggGCCG-CGAc -3'
miRNA:   3'- cCAGCU-----AGG-GCUGCGUGG-----CGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 48390 0.78 0.135087
Target:  5'- uGUCGuugcCgCCGACGC-CCGCCGUCGAg -3'
miRNA:   3'- cCAGCua--G-GGCUGCGuGGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 47952 0.66 0.658438
Target:  5'- cGG-CGGUgCCGAuggccgcCGCGCCGcCCG-CGAa -3'
miRNA:   3'- -CCaGCUAgGGCU-------GCGUGGC-GGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 47552 0.66 0.659473
Target:  5'- cGGUCGaAUUgCGuuguucGCGCGCUGCUGUCc- -3'
miRNA:   3'- -CCAGC-UAGgGC------UGCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 47367 0.66 0.638726
Target:  5'- aGGaUCGuguUgCCGaACGCACgcgCGCCGUUGAg -3'
miRNA:   3'- -CC-AGCu--AgGGC-UGCGUG---GCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 46930 0.67 0.576612
Target:  5'- cGcCGAgcuugCCCGcCGCGCCGCCGa--- -3'
miRNA:   3'- cCaGCUa----GGGCuGCGUGGCGGCagcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.