miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23263 3' -58.5 NC_005259.1 + 46868 0.74 0.236686
Target:  5'- cGGUCGAggCuuGAauCGCGCCGCCGcccgCGAu -3'
miRNA:   3'- -CCAGCUa-GggCU--GCGUGGCGGCa---GCU- -5'
23263 3' -58.5 NC_005259.1 + 46663 0.67 0.625224
Target:  5'- cGGUUGAgguUCUCGGCGagcucggccugagcCGCCGCCGcgucccUCGAc -3'
miRNA:   3'- -CCAGCU---AGGGCUGC--------------GUGGCGGC------AGCU- -5'
23263 3' -58.5 NC_005259.1 + 45740 0.66 0.638726
Target:  5'- --cCGAggCCG-CGCACCGCC-UCGGg -3'
miRNA:   3'- ccaGCUagGGCuGCGUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 45613 0.73 0.280432
Target:  5'- -cUCGGUCUCGAUGC-CCGCCGggcCGGg -3'
miRNA:   3'- ccAGCUAGGGCUGCGuGGCGGCa--GCU- -5'
23263 3' -58.5 NC_005259.1 + 44986 0.69 0.476938
Target:  5'- cGGUgCGAcUgCCGAgGCACCGCCGa--- -3'
miRNA:   3'- -CCA-GCU-AgGGCUgCGUGGCGGCagcu -5'
23263 3' -58.5 NC_005259.1 + 44228 0.7 0.430352
Target:  5'- -uUCGAgcucgCCCGcCGCGCCGCCcgcgcgcgagaaGUCGGc -3'
miRNA:   3'- ccAGCUa----GGGCuGCGUGGCGG------------CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 44160 0.67 0.586905
Target:  5'- cGGUCGAgCa--GCGCGCCGgUGUCGGa -3'
miRNA:   3'- -CCAGCUaGggcUGCGUGGCgGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 42204 0.74 0.242567
Target:  5'- cGUCGcgauggaugCCCGcCGCGCCGCCGUCc- -3'
miRNA:   3'- cCAGCua-------GGGCuGCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 41319 0.72 0.330363
Target:  5'- aGGUCGAcCUCGAaaaggGCGgUGCCGUCGGa -3'
miRNA:   3'- -CCAGCUaGGGCUg----CGUgGCGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 41240 0.69 0.476938
Target:  5'- cGGUgaCGAUCCgGuGCGCcucACCGCCccgGUCGAg -3'
miRNA:   3'- -CCA--GCUAGGgC-UGCG---UGGCGG---CAGCU- -5'
23263 3' -58.5 NC_005259.1 + 41014 0.7 0.412477
Target:  5'- gGGcCGGUCCacaguGugGUGCCGCUGUCa- -3'
miRNA:   3'- -CCaGCUAGGg----CugCGUGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 39150 0.68 0.546004
Target:  5'- --gUGAUCgCCGACGUugaaACCGCCGaacacgUCGAg -3'
miRNA:   3'- ccaGCUAG-GGCUGCG----UGGCGGC------AGCU- -5'
23263 3' -58.5 NC_005259.1 + 38930 0.66 0.659473
Target:  5'- cGUCGGUguugcugugCCCGGUGcCGCUGCCGcCGAg -3'
miRNA:   3'- cCAGCUA---------GGGCUGC-GUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 38058 0.68 0.556155
Target:  5'- --cCGAUCCugcCGACGaGCCGCCaUCGAg -3'
miRNA:   3'- ccaGCUAGG---GCUGCgUGGCGGcAGCU- -5'
23263 3' -58.5 NC_005259.1 + 37722 0.74 0.267312
Target:  5'- ---aGA-CCCGAgGCACCGCCGcCGAc -3'
miRNA:   3'- ccagCUaGGGCUgCGUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 37629 0.66 0.680131
Target:  5'- gGGaUGAUgugcugCCCGAugacCGCACCGCCGcCGc -3'
miRNA:   3'- -CCaGCUA------GGGCU----GCGUGGCGGCaGCu -5'
23263 3' -58.5 NC_005259.1 + 36743 0.67 0.632494
Target:  5'- cGGgauacgUGAUCCCGuugaGCGUgacguuaggcgcguuGCCGCCGUCc- -3'
miRNA:   3'- -CCa-----GCUAGGGC----UGCG---------------UGGCGGCAGcu -5'
23263 3' -58.5 NC_005259.1 + 35502 0.71 0.369865
Target:  5'- gGGUUGGcCCCGuuGcCGCCGCCGcCGGg -3'
miRNA:   3'- -CCAGCUaGGGCugC-GUGGCGGCaGCU- -5'
23263 3' -58.5 NC_005259.1 + 34210 0.67 0.606548
Target:  5'- uGUUGGUuugaaugucCCCGGCGCugCcggucuuGCCGUUGAa -3'
miRNA:   3'- cCAGCUA---------GGGCUGCGugG-------CGGCAGCU- -5'
23263 3' -58.5 NC_005259.1 + 32807 1.1 0.000698
Target:  5'- aGGUCGAUCCCGACGCACCGCCGUCGAu -3'
miRNA:   3'- -CCAGCUAGGGCUGCGUGGCGGCAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.