miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 14326 0.67 0.556873
Target:  5'- -cGACGCCGcCGCCcgcgugCGGgcCGCCGAcGCc -3'
miRNA:   3'- guCUGUGGCuGCGGa-----GCC--GUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 14515 0.7 0.376143
Target:  5'- --cACACCGgcgagcacgcgguGCGUUUCGGUGCCGAGUu -3'
miRNA:   3'- gucUGUGGC-------------UGCGGAGCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 15062 0.66 0.598418
Target:  5'- -cGAUACCGugGCCacccUGGC-CCuuGAGCc -3'
miRNA:   3'- guCUGUGGCugCGGa---GCCGuGG--CUCG- -5'
23264 3' -59 NC_005259.1 + 15208 0.73 0.228819
Target:  5'- -uGAUGCUGugGCgCUCGGCGCUcGGCa -3'
miRNA:   3'- guCUGUGGCugCG-GAGCCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 16447 0.68 0.45762
Target:  5'- cCGGGCACCGuCGgCaUCGGUACCccGCc -3'
miRNA:   3'- -GUCUGUGGCuGCgG-AGCCGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 16667 0.68 0.464276
Target:  5'- gGGugACCGccucgauguggucgGCGauCCUgGGCACCGAGg -3'
miRNA:   3'- gUCugUGGC--------------UGC--GGAgCCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 17760 0.73 0.258955
Target:  5'- gAGGcCGCCGcGCGCCgggccgaGcGCACCGAGCg -3'
miRNA:   3'- gUCU-GUGGC-UGCGGag-----C-CGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 18349 0.69 0.420607
Target:  5'- -cGACGCCGACGgCgacaugUGGCACaugcccgaGGGCg -3'
miRNA:   3'- guCUGUGGCUGCgGa-----GCCGUGg-------CUCG- -5'
23264 3' -59 NC_005259.1 + 18433 0.7 0.368632
Target:  5'- --cGCGCaCGACGCCUCGuGCaacACCGcGCa -3'
miRNA:   3'- gucUGUG-GCUGCGGAGC-CG---UGGCuCG- -5'
23264 3' -59 NC_005259.1 + 19215 0.66 0.619376
Target:  5'- gCGGGCGgCGACGUg--GGaCACCGAGUc -3'
miRNA:   3'- -GUCUGUgGCUGCGgagCC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 20166 0.66 0.567194
Target:  5'- uGGcCACCGcgcccgcCGCCUCGGCugaCGAGa -3'
miRNA:   3'- gUCuGUGGCu------GCGGAGCCGug-GCUCg -5'
23264 3' -59 NC_005259.1 + 20409 0.69 0.420607
Target:  5'- aGGGCAUCGAgGUCUaccCGGuCACCGAcGCc -3'
miRNA:   3'- gUCUGUGGCUgCGGA---GCC-GUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 20490 0.67 0.536401
Target:  5'- -cGACACCGcccgGCaGCUcaUCGGCGacggugucCCGAGCa -3'
miRNA:   3'- guCUGUGGC----UG-CGG--AGCCGU--------GGCUCG- -5'
23264 3' -59 NC_005259.1 + 21166 0.66 0.598418
Target:  5'- -cGuCACCGACGgCagucgggucaUCGGCG-CGAGCa -3'
miRNA:   3'- guCuGUGGCUGCgG----------AGCCGUgGCUCG- -5'
23264 3' -59 NC_005259.1 + 21229 0.7 0.394065
Target:  5'- ----aGCCGAguaCGCCUCGGCAgCGcGCg -3'
miRNA:   3'- gucugUGGCU---GCGGAGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 22698 0.67 0.556873
Target:  5'- ---cCGCCGuCGCCgucacCGGCucgaugagcuacGCCGAGCg -3'
miRNA:   3'- gucuGUGGCuGCGGa----GCCG------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 23005 0.67 0.546606
Target:  5'- gAGGuCACCGAggaCGgCUCGGuCAUCGAGa -3'
miRNA:   3'- gUCU-GUGGCU---GCgGAGCC-GUGGCUCg -5'
23264 3' -59 NC_005259.1 + 23305 0.72 0.299303
Target:  5'- uCGGGguCCGGCGCggUCGGUgucGCCGAGCc -3'
miRNA:   3'- -GUCUguGGCUGCGg-AGCCG---UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 23454 0.66 0.60784
Target:  5'- gCAGAuugcuuuCGCaCGGgGCCUCGGCauugucgguGCCGAcGCc -3'
miRNA:   3'- -GUCU-------GUG-GCUgCGGAGCCG---------UGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 24226 0.66 0.587974
Target:  5'- -cGugACCGGCgggGCCgaGGCACgCGAGUu -3'
miRNA:   3'- guCugUGGCUG---CGGagCCGUG-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.