miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23272 5' -55 NC_005259.1 + 64236 0.65 0.828499
Target:  5'- cGgGGUCGAuaGCCgacggGAUCAACGugGu -3'
miRNA:   3'- aCgCCAGCU--UGGga---CUGGUUGCugCu -5'
23272 5' -55 NC_005259.1 + 43126 0.66 0.81955
Target:  5'- aGCGacUUGAGCCCcucGCCGACGACa- -3'
miRNA:   3'- aCGCc-AGCUUGGGac-UGGUUGCUGcu -5'
23272 5' -55 NC_005259.1 + 35593 0.66 0.81955
Target:  5'- aGCugaGGUCGggUgcguCCUGGCCAcgcuGCGuCGAg -3'
miRNA:   3'- aCG---CCAGCuuG----GGACUGGU----UGCuGCU- -5'
23272 5' -55 NC_005259.1 + 40060 0.66 0.81955
Target:  5'- gGuCGGUCGcgauGACCCaugGGCCGACG-CGc -3'
miRNA:   3'- aC-GCCAGC----UUGGGa--CUGGUUGCuGCu -5'
23272 5' -55 NC_005259.1 + 42921 0.66 0.818645
Target:  5'- gGUGGccUUGAgcaugagGCCCUcGCCGugGGCGAg -3'
miRNA:   3'- aCGCC--AGCU-------UGGGAcUGGUugCUGCU- -5'
23272 5' -55 NC_005259.1 + 8960 0.66 0.818645
Target:  5'- cGUGGaCGGGCaCCgUGccgggacguagguGCCAGCGGCGAc -3'
miRNA:   3'- aCGCCaGCUUG-GG-AC-------------UGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 45108 0.66 0.810413
Target:  5'- aGcCGGUCGGGCCgaGagugguGCCGACGAgGu -3'
miRNA:   3'- aC-GCCAGCUUGGgaC------UGGUUGCUgCu -5'
23272 5' -55 NC_005259.1 + 35281 0.66 0.801097
Target:  5'- cGgGGUCGccgauguGCCCcuugaaguagaUGACCGAgGGCGGu -3'
miRNA:   3'- aCgCCAGCu------UGGG-----------ACUGGUUgCUGCU- -5'
23272 5' -55 NC_005259.1 + 33305 0.66 0.801097
Target:  5'- cUGCGGcUCGAuCCC--GCCGuCGGCGGu -3'
miRNA:   3'- -ACGCC-AGCUuGGGacUGGUuGCUGCU- -5'
23272 5' -55 NC_005259.1 + 67029 0.66 0.801097
Target:  5'- gGCGGUgGuguACCCc--UCGACGGCGAg -3'
miRNA:   3'- aCGCCAgCu--UGGGacuGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 33903 0.66 0.791611
Target:  5'- cGCGcGaCGGGCCgaGACCGGCcACGGu -3'
miRNA:   3'- aCGC-CaGCUUGGgaCUGGUUGcUGCU- -5'
23272 5' -55 NC_005259.1 + 60100 0.66 0.781967
Target:  5'- -aUGG-CGAGCUC-GACCAGCGACu- -3'
miRNA:   3'- acGCCaGCUUGGGaCUGGUUGCUGcu -5'
23272 5' -55 NC_005259.1 + 58941 0.66 0.780994
Target:  5'- cGCGGUgGcagcgucGGCCUUGGCCAGCaGGuCGGg -3'
miRNA:   3'- aCGCCAgC-------UUGGGACUGGUUG-CU-GCU- -5'
23272 5' -55 NC_005259.1 + 18466 0.67 0.772173
Target:  5'- cGcCGGUCcuGAGCCgUGcCCGACGcCGAc -3'
miRNA:   3'- aC-GCCAG--CUUGGgACuGGUUGCuGCU- -5'
23272 5' -55 NC_005259.1 + 30287 0.67 0.772173
Target:  5'- aGC-GUCGAGCUCuacggUGGCCcauuaGACGGCGAg -3'
miRNA:   3'- aCGcCAGCUUGGG-----ACUGG-----UUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 49568 0.67 0.752182
Target:  5'- cGuCGGUCGuGGCCa-GACCGGCgGGCGGg -3'
miRNA:   3'- aC-GCCAGC-UUGGgaCUGGUUG-CUGCU- -5'
23272 5' -55 NC_005259.1 + 60355 0.67 0.752182
Target:  5'- --aGGUCGAgGCCCUGcccgaaaucccGCCAaucgccggacaGCGGCGAg -3'
miRNA:   3'- acgCCAGCU-UGGGAC-----------UGGU-----------UGCUGCU- -5'
23272 5' -55 NC_005259.1 + 67447 0.67 0.742005
Target:  5'- aGCGcGUCGGggauGCCCUuuUCGGCGAUGGc -3'
miRNA:   3'- aCGC-CAGCU----UGGGAcuGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 7214 0.67 0.742005
Target:  5'- cUGCGGU-GGAUCUgcgUGAUgAACGACGGc -3'
miRNA:   3'- -ACGCCAgCUUGGG---ACUGgUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 57995 0.67 0.735848
Target:  5'- -cCGGUCGAGCCagcGACCAuguugaggaucgucCGGCGAg -3'
miRNA:   3'- acGCCAGCUUGGga-CUGGUu-------------GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.