miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23272 5' -55 NC_005259.1 + 68559 0.68 0.689743
Target:  5'- gGUGGUUGAGCCa--ACCGAgGugGAc -3'
miRNA:   3'- aCGCCAGCUUGGgacUGGUUgCugCU- -5'
23272 5' -55 NC_005259.1 + 67447 0.67 0.742005
Target:  5'- aGCGcGUCGGggauGCCCUuuUCGGCGAUGGc -3'
miRNA:   3'- aCGC-CAGCU----UGGGAcuGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 67220 0.74 0.351183
Target:  5'- cGgGGUCGAugCC-GACC-ACGGCGGu -3'
miRNA:   3'- aCgCCAGCUugGGaCUGGuUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 67029 0.66 0.801097
Target:  5'- gGCGGUgGuguACCCc--UCGACGGCGAg -3'
miRNA:   3'- aCGCCAgCu--UGGGacuGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 65805 0.67 0.731722
Target:  5'- cGCuGGUCGaAACgCUGGCCGuCGACc- -3'
miRNA:   3'- aCG-CCAGC-UUGgGACUGGUuGCUGcu -5'
23272 5' -55 NC_005259.1 + 64831 0.74 0.351183
Target:  5'- gUGUGGUgaCGGACCCUG-CUGGCGAUGGc -3'
miRNA:   3'- -ACGCCA--GCUUGGGACuGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 64236 0.65 0.828499
Target:  5'- cGgGGUCGAuaGCCgacggGAUCAACGugGu -3'
miRNA:   3'- aCgCCAGCU--UGGga---CUGGUUGCugCu -5'
23272 5' -55 NC_005259.1 + 60355 0.67 0.752182
Target:  5'- --aGGUCGAgGCCCUGcccgaaaucccGCCAaucgccggacaGCGGCGAg -3'
miRNA:   3'- acgCCAGCU-UGGGAC-----------UGGU-----------UGCUGCU- -5'
23272 5' -55 NC_005259.1 + 60100 0.66 0.781967
Target:  5'- -aUGG-CGAGCUC-GACCAGCGACu- -3'
miRNA:   3'- acGCCaGCUUGGGaCUGGUUGCUGcu -5'
23272 5' -55 NC_005259.1 + 58941 0.66 0.780994
Target:  5'- cGCGGUgGcagcgucGGCCUUGGCCAGCaGGuCGGg -3'
miRNA:   3'- aCGCCAgC-------UUGGGACUGGUUG-CU-GCU- -5'
23272 5' -55 NC_005259.1 + 58566 0.68 0.721344
Target:  5'- gGCGGUUGGGCCg-GAUC-GCGGCGc -3'
miRNA:   3'- aCGCCAGCUUGGgaCUGGuUGCUGCu -5'
23272 5' -55 NC_005259.1 + 57995 0.67 0.735848
Target:  5'- -cCGGUCGAGCCagcGACCAuguugaggaucgucCGGCGAg -3'
miRNA:   3'- acGCCAGCUUGGga-CUGGUu-------------GCUGCU- -5'
23272 5' -55 NC_005259.1 + 55344 0.72 0.439943
Target:  5'- aGCGGUggcgaugcCGAACgCCUGAgCGACGGCa- -3'
miRNA:   3'- aCGCCA--------GCUUG-GGACUgGUUGCUGcu -5'
23272 5' -55 NC_005259.1 + 50241 0.72 0.488848
Target:  5'- cGCGGgcgCGGAUCgUGGCCAACGGg-- -3'
miRNA:   3'- aCGCCa--GCUUGGgACUGGUUGCUgcu -5'
23272 5' -55 NC_005259.1 + 49568 0.67 0.752182
Target:  5'- cGuCGGUCGuGGCCa-GACCGGCgGGCGGg -3'
miRNA:   3'- aC-GCCAGC-UUGGgaCUGGUUG-CUGCU- -5'
23272 5' -55 NC_005259.1 + 47923 0.69 0.657664
Target:  5'- gGC-GUCGccgaGGCCCUGgaaGCCGAUGACGGc -3'
miRNA:   3'- aCGcCAGC----UUGGGAC---UGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 45108 0.66 0.810413
Target:  5'- aGcCGGUCGGGCCgaGagugguGCCGACGAgGu -3'
miRNA:   3'- aC-GCCAGCUUGGgaC------UGGUUGCUgCu -5'
23272 5' -55 NC_005259.1 + 44961 0.68 0.700344
Target:  5'- gUGCGGUCaucggGAugCCgagGGCCGguGCGACu- -3'
miRNA:   3'- -ACGCCAG-----CUugGGa--CUGGU--UGCUGcu -5'
23272 5' -55 NC_005259.1 + 44857 0.68 0.710881
Target:  5'- aGCaGUC--GCUCaGACCGGCGGCGAg -3'
miRNA:   3'- aCGcCAGcuUGGGaCUGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 44277 0.69 0.62538
Target:  5'- --aGGcCGAacGCCUUGGCCAGCG-CGAg -3'
miRNA:   3'- acgCCaGCU--UGGGACUGGUUGCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.