miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23297 5' -51.6 NC_005259.1 + 62130 0.66 0.929181
Target:  5'- cCGaGGUGA--UCGUCucgACCAccucaggccGCAGCACCu -3'
miRNA:   3'- -GC-CCAUUcaAGUAG---UGGU---------CGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 26657 0.66 0.923366
Target:  5'- -cGGcAGGUUCGgcgCAcCCGGCGGCAgCCc -3'
miRNA:   3'- gcCCaUUCAAGUa--GU-GGUCGUCGU-GG- -5'
23297 5' -51.6 NC_005259.1 + 42061 0.66 0.917269
Target:  5'- gGGGUGGGcggCuaggUAUC-GCAGCACCg -3'
miRNA:   3'- gCCCAUUCaa-Gua--GUGGuCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 65111 0.66 0.91089
Target:  5'- -cGGUcAGUgCGUCACCgucGGC-GCACCg -3'
miRNA:   3'- gcCCAuUCAaGUAGUGG---UCGuCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 45760 0.67 0.904232
Target:  5'- gGGGaUGAGcaCGcccUCGCCGGgugcCAGCACCg -3'
miRNA:   3'- gCCC-AUUCaaGU---AGUGGUC----GUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 8553 0.67 0.904232
Target:  5'- gCGGuGUAGcc-CAUgCGCC-GCAGCACCg -3'
miRNA:   3'- -GCC-CAUUcaaGUA-GUGGuCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 51344 0.67 0.890089
Target:  5'- -cGGUGAGcUCGgauaugC-CCGGUGGCACCg -3'
miRNA:   3'- gcCCAUUCaAGUa-----GuGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 29195 0.67 0.882613
Target:  5'- uGGGgcggauGGUUCGcccccgcaugguUCGCCAGCcucGGCGCg -3'
miRNA:   3'- gCCCau----UCAAGU------------AGUGGUCG---UCGUGg -5'
23297 5' -51.6 NC_005259.1 + 66940 0.67 0.881851
Target:  5'- gGGGUGAGcgggaCACCGGCGagcuguuucuugcGCGCCu -3'
miRNA:   3'- gCCCAUUCaaguaGUGGUCGU-------------CGUGG- -5'
23297 5' -51.6 NC_005259.1 + 58694 0.67 0.874874
Target:  5'- gGGGUcGGcUCGUCGCCGccGCcGuCACCa -3'
miRNA:   3'- gCCCAuUCaAGUAGUGGU--CGuC-GUGG- -5'
23297 5' -51.6 NC_005259.1 + 49558 0.68 0.850145
Target:  5'- cCGGGcu-GUUCGUCggucguggccagACCGGCgggcggggucAGCACCu -3'
miRNA:   3'- -GCCCauuCAAGUAG------------UGGUCG----------UCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 57271 0.68 0.850145
Target:  5'- uGGGcGAGggauUgACCGGUGGCACCu -3'
miRNA:   3'- gCCCaUUCaaguAgUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 46400 0.68 0.832477
Target:  5'- gCGcGGUGAGggCAUCgaaACCGgGCuguGCACCc -3'
miRNA:   3'- -GC-CCAUUCaaGUAG---UGGU-CGu--CGUGG- -5'
23297 5' -51.6 NC_005259.1 + 702 0.68 0.83157
Target:  5'- gGGGUcugaacaugAGGUggcaucgcgagaaUCA-CACCGGCGGUGCCu -3'
miRNA:   3'- gCCCA---------UUCA-------------AGUaGUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 30748 0.68 0.829751
Target:  5'- ----aGAGUUCAUgaacugcaugccgaCGCCGGUGGCACCg -3'
miRNA:   3'- gcccaUUCAAGUA--------------GUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 28743 0.69 0.817719
Target:  5'- aGGGUuacgcgcccgagcguGAGaUCGUCGCCGGUgccgacgaGGUACCc -3'
miRNA:   3'- gCCCA---------------UUCaAGUAGUGGUCG--------UCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 21975 0.69 0.813948
Target:  5'- uGGGUGucGUUC-UCcCCAcCGGCACCg -3'
miRNA:   3'- gCCCAUu-CAAGuAGuGGUcGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 21759 0.69 0.804385
Target:  5'- uCGGGUAAGUUCugauggACCGGCuG-ACCu -3'
miRNA:   3'- -GCCCAUUCAAGuag---UGGUCGuCgUGG- -5'
23297 5' -51.6 NC_005259.1 + 49612 0.69 0.798558
Target:  5'- uCGGGcagcucaucaUCGUCAUCGGCGGCAgCCg -3'
miRNA:   3'- -GCCCauuca-----AGUAGUGGUCGUCGU-GG- -5'
23297 5' -51.6 NC_005259.1 + 24202 0.69 0.794638
Target:  5'- cCGGGUcaucGAGacCAUCgacaacgugACCGGCGGgGCCg -3'
miRNA:   3'- -GCCCA----UUCaaGUAG---------UGGUCGUCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.