miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 3' -63.4 NC_005259.1 + 68841 0.68 0.260973
Target:  5'- aGUCGGUgaggugGGCCaucaugucgacuuGCCcgcGCCGGGCgCGCCg -3'
miRNA:   3'- cUAGCUA------CCGG-------------CGGa--CGGCCCG-GCGG- -5'
23298 3' -63.4 NC_005259.1 + 67160 0.69 0.23181
Target:  5'- uGUCGAUGGUgGCg-GCCauGCCGCCg -3'
miRNA:   3'- cUAGCUACCGgCGgaCGGccCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 65856 0.66 0.369472
Target:  5'- --aUGGUGGCCuccGUCUGCCccggugGGGCgGUCa -3'
miRNA:   3'- cuaGCUACCGG---CGGACGG------CCCGgCGG- -5'
23298 3' -63.4 NC_005259.1 + 65155 0.67 0.330385
Target:  5'- aGUCGAaacgGGCCaugGCCcGCCGGGUcaaggCGCUg -3'
miRNA:   3'- cUAGCUa---CCGG---CGGaCGGCCCG-----GCGG- -5'
23298 3' -63.4 NC_005259.1 + 64425 0.66 0.38597
Target:  5'- uGAggGAUcGCCGacgagCUGCCGGGgCGCUg -3'
miRNA:   3'- -CUagCUAcCGGCg----GACGGCCCgGCGG- -5'
23298 3' -63.4 NC_005259.1 + 63638 0.66 0.369472
Target:  5'- cAUCG-UGGCgagcugcuCGCUgGCCGGGaCGCCg -3'
miRNA:   3'- cUAGCuACCG--------GCGGaCGGCCCgGCGG- -5'
23298 3' -63.4 NC_005259.1 + 62930 0.66 0.361407
Target:  5'- -cUCGGUuugcGGCuCGCgcugCUGCCGGGCacCGCUg -3'
miRNA:   3'- cuAGCUA----CCG-GCG----GACGGCCCG--GCGG- -5'
23298 3' -63.4 NC_005259.1 + 60265 0.72 0.15518
Target:  5'- ---aGGcUGGCCaccaGCgCUGCCGGGCgGCCa -3'
miRNA:   3'- cuagCU-ACCGG----CG-GACGGCCCGgCGG- -5'
23298 3' -63.4 NC_005259.1 + 60125 0.69 0.249324
Target:  5'- uAUCGgcGGCCucguCCUGCgCGgccuuGGCCGCCg -3'
miRNA:   3'- cUAGCuaCCGGc---GGACG-GC-----CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 58810 0.66 0.39355
Target:  5'- -cUCGGcgGGCuCGCgCUGCuCGGcacccucGCCGCCc -3'
miRNA:   3'- cuAGCUa-CCG-GCG-GACG-GCC-------CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 58578 0.73 0.12615
Target:  5'- gGAUCGc-GGCgCGgCUGCCGGGCCGg- -3'
miRNA:   3'- -CUAGCuaCCG-GCgGACGGCCCGGCgg -5'
23298 3' -63.4 NC_005259.1 + 57685 0.72 0.139977
Target:  5'- aAUCGAccgUGGCCaGgUUGCCGGGCUuGCCc -3'
miRNA:   3'- cUAGCU---ACCGG-CgGACGGCCCGG-CGG- -5'
23298 3' -63.4 NC_005259.1 + 56880 0.68 0.280926
Target:  5'- -cUCGAUGaGCCGaCC-GCCaaucgcagcGuGGCCGCCg -3'
miRNA:   3'- cuAGCUAC-CGGC-GGaCGG---------C-CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 56217 0.69 0.23181
Target:  5'- gGAUCGGUGuaUGCCaGUCGucGCCGCCg -3'
miRNA:   3'- -CUAGCUACcgGCGGaCGGCc-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 55894 0.66 0.369472
Target:  5'- -cUCGggGGUCGC--GCCGGGgUCGCUg -3'
miRNA:   3'- cuAGCuaCCGGCGgaCGGCCC-GGCGG- -5'
23298 3' -63.4 NC_005259.1 + 55016 0.7 0.220718
Target:  5'- -cUUGgcGGUCGUCUcgGCaCGGGCUGCCg -3'
miRNA:   3'- cuAGCuaCCGGCGGA--CG-GCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 54708 0.69 0.225652
Target:  5'- ---gGGUGGCCucaGCCUgguacaggacauaGCCGaGGCUGCCg -3'
miRNA:   3'- cuagCUACCGG---CGGA-------------CGGC-CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 53259 0.73 0.12615
Target:  5'- cGUCGcc-GCCGCUgucGCCGGuGCCGCCa -3'
miRNA:   3'- cUAGCuacCGGCGGa--CGGCC-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 49536 0.69 0.249324
Target:  5'- -cUCGAacgUGGCCaCCucagUGCCGGGCUGUUc -3'
miRNA:   3'- cuAGCU---ACCGGcGG----ACGGCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 49082 0.73 0.119721
Target:  5'- gGAUCGcucgagggugucAUGGCCGCCcGCCGGGaucucaagaCGCUg -3'
miRNA:   3'- -CUAGC------------UACCGGCGGaCGGCCCg--------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.