miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 48052 0.66 0.864243
Target:  5'- gGUGGCCAC--GGCGGGu-AGCGCCGc -3'
miRNA:   3'- -UACUGGUGguUCGUCUucUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 17282 0.66 0.864243
Target:  5'- -cGACCGCUAuuugaAGCGGuacuuGAcccuguACGCCGAg -3'
miRNA:   3'- uaCUGGUGGU-----UCGUCuu---CU------UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 58589 0.66 0.864243
Target:  5'- -cGGCUGCCGGGcCGGAucuuuucGAGCGCCu- -3'
miRNA:   3'- uaCUGGUGGUUC-GUCUu------CUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 4972 0.66 0.855906
Target:  5'- -gGuauCCGCCGAGUucGGccGAugGCCGGg -3'
miRNA:   3'- uaCu--GGUGGUUCG--UCuuCUugCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 51738 0.66 0.855906
Target:  5'- gAUGGCCACCGccacgcucucGGCAgcguugcgcucGgcGAGCGCCu- -3'
miRNA:   3'- -UACUGGUGGU----------UCGU-----------CuuCUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 37591 0.66 0.847329
Target:  5'- -cGAUCugCAAGCu---GAACGUCGGg -3'
miRNA:   3'- uaCUGGugGUUCGucuuCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 56075 0.66 0.83852
Target:  5'- -aGACCGUCGAGCAGAucGGugcuCGUCGGg -3'
miRNA:   3'- uaCUGGUGGUUCGUCU--UCuu--GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 5477 0.66 0.83852
Target:  5'- aAUGGCCggugcaauagcGCCGAGC-GAGGAucgagcuacgcGCGCCGc -3'
miRNA:   3'- -UACUGG-----------UGGUUCGuCUUCU-----------UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 55539 0.66 0.83852
Target:  5'- --cGCCGCCucguuGGCGucGAGGAUGCCGAa -3'
miRNA:   3'- uacUGGUGGu----UCGUc-UUCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 38720 0.66 0.837627
Target:  5'- uUGACCACCGcugccgccguaccGGCGGuGGccCGCCGc -3'
miRNA:   3'- uACUGGUGGU-------------UCGUCuUCuuGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 35637 0.66 0.829489
Target:  5'- -gGGCCGCCGccgcugccgcuGGC-GAGGGugGCCa- -3'
miRNA:   3'- uaCUGGUGGU-----------UCGuCUUCUugCGGcu -5'
23298 5' -53.1 NC_005259.1 + 37275 0.66 0.829489
Target:  5'- -aGGCCGCCcGGCAGGacuugcauggcGGugccCGCCGGg -3'
miRNA:   3'- uaCUGGUGGuUCGUCU-----------UCuu--GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 55460 0.66 0.829489
Target:  5'- -gGGCCACCcguGCAGggGuguACGCguaGAu -3'
miRNA:   3'- uaCUGGUGGuu-CGUCuuCu--UGCGg--CU- -5'
23298 5' -53.1 NC_005259.1 + 24835 0.66 0.825816
Target:  5'- -cGcACCgACCAAGCAGuccgugcgcuACGCCGAg -3'
miRNA:   3'- uaC-UGG-UGGUUCGUCuucu------UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 44944 0.67 0.820245
Target:  5'- cAUGgcACCAgCGGGCAGugcggucaucGGGAUGCCGAg -3'
miRNA:   3'- -UAC--UGGUgGUUCGUCu---------UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 14980 0.67 0.820245
Target:  5'- -aGGCCGCCGGGUAcAAGAcacagcAgGCCGGg -3'
miRNA:   3'- uaCUGGUGGUUCGUcUUCU------UgCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 30686 0.67 0.820245
Target:  5'- cUGGCCACCugAGGCAGcacGAGCguguuguugccGCCGAc -3'
miRNA:   3'- uACUGGUGG--UUCGUCuu-CUUG-----------CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 64928 0.67 0.820245
Target:  5'- gAUGACgaguGCC-AGCGcGAGGGugGCCGGg -3'
miRNA:   3'- -UACUGg---UGGuUCGU-CUUCUugCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 10201 0.67 0.820245
Target:  5'- gAUGACgACCGGGCAGcucgaccaccacGAGAugGCg-- -3'
miRNA:   3'- -UACUGgUGGUUCGUC------------UUCUugCGgcu -5'
23298 5' -53.1 NC_005259.1 + 1888 0.67 0.819309
Target:  5'- -aGGCCGCCGAgaucgcgcgagcuGCcGAGGAagcGCGCCGc -3'
miRNA:   3'- uaCUGGUGGUU-------------CGuCUUCU---UGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.