Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23301 | 5' | -61.3 | NC_005259.1 | + | 48050 | 0.71 | 0.226156 |
Target: 5'- ---cCGGUGGCcacggcGGGuagcgcCGCCGCGCCCu -3' miRNA: 3'- guucGCCACCGu-----CCCu-----GCGGCGUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 21390 | 0.7 | 0.249583 |
Target: 5'- gAGGCGGUGcaacgcGCAuGGGACGCCcGUagACCUg -3' miRNA: 3'- gUUCGCCAC------CGU-CCCUGCGG-CG--UGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 32589 | 0.7 | 0.249583 |
Target: 5'- -cAGCGGUuuacgcgcGuGCA-GGACGCCGaCACCCu -3' miRNA: 3'- guUCGCCA--------C-CGUcCCUGCGGC-GUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 43954 | 0.7 | 0.281642 |
Target: 5'- -cGGCGaugGGCGGGGcCGCCGCcugACCg -3' miRNA: 3'- guUCGCca-CCGUCCCuGCGGCG---UGGg -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 32099 | 0.69 | 0.288433 |
Target: 5'- cCGGGCGGUGGC-GGGAaauaGCUcuCACCg -3' miRNA: 3'- -GUUCGCCACCGuCCCUg---CGGc-GUGGg -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 18381 | 0.69 | 0.295352 |
Target: 5'- aGGGCGGUaGCgAGGGAgacgagcaccuCGCCGaGCCCg -3' miRNA: 3'- gUUCGCCAcCG-UCCCU-----------GCGGCgUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 50438 | 0.69 | 0.3024 |
Target: 5'- -cAGCGGUgcgGGCucGGGGuCGCCGguCUCg -3' miRNA: 3'- guUCGCCA---CCG--UCCCuGCGGCguGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 58796 | 0.69 | 0.3024 |
Target: 5'- gAGGCGGUgauugccucGGCGGGcucGCGCUgcucgGCACCCu -3' miRNA: 3'- gUUCGCCA---------CCGUCCc--UGCGG-----CGUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 47952 | 0.66 | 0.479298 |
Target: 5'- -cGGCGGUGcCGauGGcCGCCGCGCCg -3' miRNA: 3'- guUCGCCACcGUc-CCuGCGGCGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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