miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 3' -57.2 NC_005259.1 + 61370 0.66 0.698123
Target:  5'- -gGUCCAACCAccugcugccacacgcCCGAUgccGUCGGUGUc- -3'
miRNA:   3'- gaCGGGUUGGU---------------GGCUA---CAGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 9552 0.66 0.693909
Target:  5'- gCUGCCCGGCCucgACCGc-GUCGGcgagGUGc -3'
miRNA:   3'- -GACGGGUUGG---UGGCuaCAGCCa---CGCa -5'
23313 3' -57.2 NC_005259.1 + 30825 0.66 0.693909
Target:  5'- -aGUCCGGCgCGCCGAgGUCGGcaaccUGCa- -3'
miRNA:   3'- gaCGGGUUG-GUGGCUaCAGCC-----ACGca -5'
23313 3' -57.2 NC_005259.1 + 35565 0.66 0.676967
Target:  5'- uUGCcgCCGACCGCCGAgaUcccguuguagcugagGUCGgGUGCGUc -3'
miRNA:   3'- gACG--GGUUGGUGGCU--A---------------CAGC-CACGCA- -5'
23313 3' -57.2 NC_005259.1 + 35294 0.66 0.672714
Target:  5'- gUGCCCcuugaaguaGAUgACCGAgggCGGUGUGUa -3'
miRNA:   3'- gACGGG---------UUGgUGGCUacaGCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 27374 0.66 0.662057
Target:  5'- gUGCCCGGCacggugaccggCGgCGGUGUCGGcagcgGCGg -3'
miRNA:   3'- gACGGGUUG-----------GUgGCUACAGCCa----CGCa -5'
23313 3' -57.2 NC_005259.1 + 7224 0.66 0.65565
Target:  5'- uCUGCgugaugaacgacggCAGCCgcGCCGGUGUCGaGUGCGc -3'
miRNA:   3'- -GACGg-------------GUUGG--UGGCUACAGC-CACGCa -5'
23313 3' -57.2 NC_005259.1 + 37535 0.66 0.640675
Target:  5'- -cGUCgGGCCGCCGuUGUUGcGUGUGg -3'
miRNA:   3'- gaCGGgUUGGUGGCuACAGC-CACGCa -5'
23313 3' -57.2 NC_005259.1 + 48164 0.66 0.637463
Target:  5'- -cGCCCGaaaccgcccccgccGCCGCCgGGUGUCGGaccggGCa- -3'
miRNA:   3'- gaCGGGU--------------UGGUGG-CUACAGCCa----CGca -5'
23313 3' -57.2 NC_005259.1 + 23127 0.67 0.629968
Target:  5'- gCUGUCCGG-CAgCGAUGUgacgUGGUGCGa -3'
miRNA:   3'- -GACGGGUUgGUgGCUACA----GCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 26356 0.67 0.619262
Target:  5'- -gGCCgAGCUGCgcguaGAUGUCGGUGgCGa -3'
miRNA:   3'- gaCGGgUUGGUGg----CUACAGCCAC-GCa -5'
23313 3' -57.2 NC_005259.1 + 46971 0.67 0.608568
Target:  5'- uUGgCCAcGCCGCCGAUGaUCGGgccgagggUGCGc -3'
miRNA:   3'- gACgGGU-UGGUGGCUAC-AGCC--------ACGCa -5'
23313 3' -57.2 NC_005259.1 + 28266 0.67 0.597893
Target:  5'- uUGCCCGAaaccgucggcuCUGCCGAUGUaggccaCGGUGCc- -3'
miRNA:   3'- gACGGGUU-----------GGUGGCUACA------GCCACGca -5'
23313 3' -57.2 NC_005259.1 + 34062 0.68 0.566064
Target:  5'- uUGUCCGACCACgGcgG-CGGUGUc- -3'
miRNA:   3'- gACGGGUUGGUGgCuaCaGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 40873 0.68 0.555546
Target:  5'- -cGCCCAcagcucaccgGCCACCGuggcgggGUCGGcaGCGUc -3'
miRNA:   3'- gaCGGGU----------UGGUGGCua-----CAGCCa-CGCA- -5'
23313 3' -57.2 NC_005259.1 + 50341 0.68 0.555546
Target:  5'- -gGCCCuuguCCucggucaCGAUGUCGGUGUGc -3'
miRNA:   3'- gaCGGGuu--GGug-----GCUACAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 2725 0.68 0.545085
Target:  5'- uCUGCUCAacACCACCGAUGcCGaggucgccgucGUGCa- -3'
miRNA:   3'- -GACGGGU--UGGUGGCUACaGC-----------CACGca -5'
23313 3' -57.2 NC_005259.1 + 57302 0.68 0.534689
Target:  5'- gUGCacgaCAucgagcACCGgCGGUGUCGGUGUGg -3'
miRNA:   3'- gACGg---GU------UGGUgGCUACAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 31120 0.68 0.534689
Target:  5'- -cGCCCGAugUCGCCGAUGaUCGGgaUGCu- -3'
miRNA:   3'- gaCGGGUU--GGUGGCUAC-AGCC--ACGca -5'
23313 3' -57.2 NC_005259.1 + 39775 0.68 0.524364
Target:  5'- -aGCCU-GCUGCUGGUGaUCGGUGCGc -3'
miRNA:   3'- gaCGGGuUGGUGGCUAC-AGCCACGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.