miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 30363 0.7 0.130534
Target:  5'- gGACGCCGauCUGCCCGC-UGCccggcgagaaaccGGGCCu -3'
miRNA:   3'- gCUGCGGC--GGCGGGCGcACG-------------CCCGGc -5'
23313 5' -67.4 NC_005259.1 + 47964 0.7 0.130862
Target:  5'- uGGcCGCCgcGCCGCCCGCGaauaUGCcGGGCa- -3'
miRNA:   3'- gCU-GCGG--CGGCGGGCGC----ACG-CCCGgc -5'
23313 5' -67.4 NC_005259.1 + 8884 0.7 0.135536
Target:  5'- -cACGCCGCCugagcgucacgcucgGCCUGC-UGaCGGGCCGc -3'
miRNA:   3'- gcUGCGGCGG---------------CGGGCGcAC-GCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 33551 0.7 0.137586
Target:  5'- uCGuCGCCGgucaggaagaaCCGCCCgaacuugaccGCGUcGCGGGCCa -3'
miRNA:   3'- -GCuGCGGC-----------GGCGGG----------CGCA-CGCCCGGc -5'
23313 5' -67.4 NC_005259.1 + 43247 0.7 0.144625
Target:  5'- uGACGauGCCGCCCGCGc-CGGGUg- -3'
miRNA:   3'- gCUGCggCGGCGGGCGCacGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 9807 0.7 0.148267
Target:  5'- -cGCGCCacuaCCGCCCGCaccgccggGUGCGGcGCUGg -3'
miRNA:   3'- gcUGCGGc---GGCGGGCG--------CACGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 45395 0.69 0.151993
Target:  5'- uCGGgGUCGCCGCCgagCGCGcUGauGGCCGc -3'
miRNA:   3'- -GCUgCGGCGGCGG---GCGC-ACgcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 36630 0.69 0.151993
Target:  5'- -cGCGCCGCCcgcaagGCCCGCGaucaGCGaGCCGc -3'
miRNA:   3'- gcUGCGGCGG------CGGGCGCa---CGCcCGGC- -5'
23313 5' -67.4 NC_005259.1 + 32316 0.69 0.151993
Target:  5'- uGA-GCCGCaguGCCCGCcaauuGUGCGcGGCCa -3'
miRNA:   3'- gCUgCGGCGg--CGGGCG-----CACGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 5192 0.69 0.159699
Target:  5'- cCGACGCCGCCGCCaaGCucaccGCGcucGCCGa -3'
miRNA:   3'- -GCUGCGGCGGCGGg-CGca---CGCc--CGGC- -5'
23313 5' -67.4 NC_005259.1 + 29934 0.69 0.159699
Target:  5'- gCGugGCCGCCacgcgGCCCggucGCGgcuggugggGCGGGCgGu -3'
miRNA:   3'- -GCugCGGCGG-----CGGG----CGCa--------CGCCCGgC- -5'
23313 5' -67.4 NC_005259.1 + 37398 0.69 0.161282
Target:  5'- gCGcCGCCcaugguguuguugacGCCGCCCGcCGUGCcauuGGCCa -3'
miRNA:   3'- -GCuGCGG---------------CGGCGGGC-GCACGc---CCGGc -5'
23313 5' -67.4 NC_005259.1 + 17184 0.69 0.171919
Target:  5'- gCGGCGCaggaaGCCGCgCGUGagGCGGGUa- -3'
miRNA:   3'- -GCUGCGg----CGGCGgGCGCa-CGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 66723 0.68 0.176175
Target:  5'- uGAUGcCCGCCGCCaCGCG-GuCaGGCUGa -3'
miRNA:   3'- gCUGC-GGCGGCGG-GCGCaC-GcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 1858 0.68 0.184519
Target:  5'- cCGAgaaaGCCGCCG-CCGCGUuccguaaGCaGGCCGc -3'
miRNA:   3'- -GCUg---CGGCGGCgGGCGCA-------CGcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 46946 0.68 0.184968
Target:  5'- -cGCGCCGCCGaCCGCGUugaGCuuguuGGCCa -3'
miRNA:   3'- gcUGCGGCGGCgGGCGCA---CGc----CCGGc -5'
23313 5' -67.4 NC_005259.1 + 35643 0.68 0.189508
Target:  5'- cCGcCGCUGCCGCUgGCGaGgGuGGCCa -3'
miRNA:   3'- -GCuGCGGCGGCGGgCGCaCgC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 44646 0.68 0.191352
Target:  5'- cCGGUGCCGCCGCCCGacucgaacgccacacCGUugggcaGCGuGGCCc -3'
miRNA:   3'- -GCUGCGGCGGCGGGC---------------GCA------CGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 1365 0.68 0.194146
Target:  5'- gGGcCGCuCGCCGCgCCGCccGCGaGGCCc -3'
miRNA:   3'- gCU-GCG-GCGGCG-GGCGcaCGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 15393 0.68 0.198405
Target:  5'- cCGugGCCGCgcacucccaagggUGCgCUGCGUGCcaccaaGGCCGa -3'
miRNA:   3'- -GCugCGGCG-------------GCG-GGCGCACGc-----CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.