Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23317 | 3' | -61.8 | NC_005259.1 | + | 13330 | 1.11 | 0.000273 |
Target: 5'- uGGUAACCCACGGCGGGACCGCCCCGCc -3' miRNA: 3'- -CCAUUGGGUGCCGCCCUGGCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 57 | 0.83 | 0.032865 |
Target: 5'- gGGUAACUUAguucgugucaGGCGGGACCGUCCCGCc -3' miRNA: 3'- -CCAUUGGGUg---------CCGCCCUGGCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 48051 | 0.82 | 0.04088 |
Target: 5'- cGGUGG-CCACGGCGGGuagcGCCGCCgCGCc -3' miRNA: 3'- -CCAUUgGGUGCCGCCC----UGGCGGgGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 65880 | 0.75 | 0.122315 |
Target: 5'- gGGgcGgUCAauCGGCGGGACgGUCCCGCc -3' miRNA: 3'- -CCauUgGGU--GCCGCCCUGgCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 28492 | 0.75 | 0.125537 |
Target: 5'- gGGUAACUUAUcucuugucaGGCGGGAUCGaCCCGCc -3' miRNA: 3'- -CCAUUGGGUG---------CCGCCCUGGCgGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 50031 | 0.75 | 0.128837 |
Target: 5'- cGUAAUCCGCuGUGGccucgacACCGCCCCGCa -3' miRNA: 3'- cCAUUGGGUGcCGCCc------UGGCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 8665 | 0.75 | 0.132217 |
Target: 5'- cGGgcuGCCaCGCGGgcaaCGGGGCCGCCUCGa -3' miRNA: 3'- -CCau-UGG-GUGCC----GCCCUGGCGGGGCg -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 25727 | 0.74 | 0.158253 |
Target: 5'- gGGUAccaacaaCCACGaaGGGACCGCCgCGCa -3' miRNA: 3'- -CCAUug-----GGUGCcgCCCUGGCGGgGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 66508 | 0.73 | 0.166502 |
Target: 5'- ----uUCCuguCGGCGGGGCgGUCCCGCc -3' miRNA: 3'- ccauuGGGu--GCCGCCCUGgCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 51081 | 0.73 | 0.175136 |
Target: 5'- cGGUGgcaugGCCCACgauaacgagGGCGGGAuCUGUCCgGCa -3' miRNA: 3'- -CCAU-----UGGGUG---------CCGCCCU-GGCGGGgCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 14335 | 0.73 | 0.175136 |
Target: 5'- ---cGCCCGCGuGCGGG-CCGCCgaCGCc -3' miRNA: 3'- ccauUGGGUGC-CGCCCuGGCGGg-GCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 2412 | 0.73 | 0.175136 |
Target: 5'- gGGUAAgUuuucucuuguCAgGGCGGGACgGUCCCGCc -3' miRNA: 3'- -CCAUUgG----------GUgCCGCCCUGgCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 27384 | 0.73 | 0.1796 |
Target: 5'- cGGUGACCgGCGGCGGugucggcagcGGCgGCagcucggugCCCGCg -3' miRNA: 3'- -CCAUUGGgUGCCGCC----------CUGgCG---------GGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 23731 | 0.73 | 0.184165 |
Target: 5'- cGGU-GCUCAC-GUGGGACggcgaccccgaCGCCCCGCa -3' miRNA: 3'- -CCAuUGGGUGcCGCCCUG-----------GCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 28292 | 0.73 | 0.184165 |
Target: 5'- uGUAGgCCACGGU---GCCGCCCUGCg -3' miRNA: 3'- cCAUUgGGUGCCGcccUGGCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 48775 | 0.73 | 0.188832 |
Target: 5'- gGGUAACUUAguucaugucaGGCGGGAaCGUCCCGCc -3' miRNA: 3'- -CCAUUGGGUg---------CCGCCCUgGCGGGGCG- -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 60428 | 0.72 | 0.193603 |
Target: 5'- gGGUGGCCCACGG-GGcGGCCaCgCCCGa -3' miRNA: 3'- -CCAUUGGGUGCCgCC-CUGGcG-GGGCg -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 41723 | 0.72 | 0.203463 |
Target: 5'- ---uACCgGCGGCGGGgaggacACCGCCUCGa -3' miRNA: 3'- ccauUGGgUGCCGCCC------UGGCGGGGCg -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 1108 | 0.72 | 0.208554 |
Target: 5'- gGGUAACUUAaucggugucaGGCGGGAcagacCCGCCCCa- -3' miRNA: 3'- -CCAUUGGGUg---------CCGCCCU-----GGCGGGGcg -5' |
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23317 | 3' | -61.8 | NC_005259.1 | + | 57127 | 0.72 | 0.210621 |
Target: 5'- ---cGCCCAuCGGCGGGACCGagcaguaguggcccuCCCaCGUg -3' miRNA: 3'- ccauUGGGU-GCCGCCCUGGC---------------GGG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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