miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23317 3' -61.8 NC_005259.1 + 57 0.83 0.032865
Target:  5'- gGGUAACUUAguucgugucaGGCGGGACCGUCCCGCc -3'
miRNA:   3'- -CCAUUGGGUg---------CCGCCCUGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 1108 0.72 0.208554
Target:  5'- gGGUAACUUAaucggugucaGGCGGGAcagacCCGCCCCa- -3'
miRNA:   3'- -CCAUUGGGUg---------CCGCCCU-----GGCGGGGcg -5'
23317 3' -61.8 NC_005259.1 + 2412 0.73 0.175136
Target:  5'- gGGUAAgUuuucucuuguCAgGGCGGGACgGUCCCGCc -3'
miRNA:   3'- -CCAUUgG----------GUgCCGCCCUGgCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 3396 0.69 0.32742
Target:  5'- gGGUAAgUUAUcucuugucaGGCGGGAUCGaCCCGCc -3'
miRNA:   3'- -CCAUUgGGUG---------CCGCCCUGGCgGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 3944 0.66 0.493448
Target:  5'- cGGUcACCUACugGGaCGGGcgauucuggaccugaGCgGUCCCGCg -3'
miRNA:   3'- -CCAuUGGGUG--CC-GCCC---------------UGgCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 4486 0.68 0.390681
Target:  5'- cGGUGGaCCAUGGU--GAUCGCCaCCGCg -3'
miRNA:   3'- -CCAUUgGGUGCCGccCUGGCGG-GGCG- -5'
23317 3' -61.8 NC_005259.1 + 5641 0.67 0.41289
Target:  5'- cGU-GCCCggcgaggACGGCGGGcgcuACacgcgcgacaacauCGCCCCGCa -3'
miRNA:   3'- cCAuUGGG-------UGCCGCCC----UG--------------GCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 6191 0.68 0.382349
Target:  5'- gGGUGAUCUgagcaGCGugaGCGGGgugaGCCGCCgCGCc -3'
miRNA:   3'- -CCAUUGGG-----UGC---CGCCC----UGGCGGgGCG- -5'
23317 3' -61.8 NC_005259.1 + 6236 0.68 0.366044
Target:  5'- cGUGACCguggGCGaGUGGGucgauaucccgcACCGCCgCCGCg -3'
miRNA:   3'- cCAUUGGg---UGC-CGCCC------------UGGCGG-GGCG- -5'
23317 3' -61.8 NC_005259.1 + 6554 0.67 0.443078
Target:  5'- cGGUGaaGCUgugCGCGGCGugucaGGCCGCCUCGg -3'
miRNA:   3'- -CCAU--UGG---GUGCCGCc----CUGGCGGGGCg -5'
23317 3' -61.8 NC_005259.1 + 7420 0.71 0.247334
Target:  5'- cGUcGCCguCGGCGGuGcCCGCgCCGCa -3'
miRNA:   3'- cCAuUGGguGCCGCC-CuGGCGgGGCG- -5'
23317 3' -61.8 NC_005259.1 + 7838 0.66 0.499209
Target:  5'- cGGUcACCCcuuACGGgacGGACCGCgCCGa -3'
miRNA:   3'- -CCAuUGGG---UGCCgc-CCUGGCGgGGCg -5'
23317 3' -61.8 NC_005259.1 + 8009 0.7 0.285165
Target:  5'- cGGUAGCCCcCGcccCGGcGGCCaCCCCGUu -3'
miRNA:   3'- -CCAUUGGGuGCc--GCC-CUGGcGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 8557 0.67 0.39913
Target:  5'- uGUAGCCCAUGcGCcgcaGcACCGCCaCCGCc -3'
miRNA:   3'- cCAUUGGGUGC-CGc---CcUGGCGG-GGCG- -5'
23317 3' -61.8 NC_005259.1 + 8665 0.75 0.132217
Target:  5'- cGGgcuGCCaCGCGGgcaaCGGGGCCGCCUCGa -3'
miRNA:   3'- -CCau-UGG-GUGCC----GCCCUGGCGGGGCg -5'
23317 3' -61.8 NC_005259.1 + 8758 0.67 0.425167
Target:  5'- aGGUcgaGGCCCuuggccagcGCGGCGGuGAugagcUCGgCCCGCu -3'
miRNA:   3'- -CCA---UUGGG---------UGCCGCC-CU-----GGCgGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 8986 0.69 0.334897
Target:  5'- aGGU-GCCaGCGGCGacGGcaGCCGCCUCGUc -3'
miRNA:   3'- -CCAuUGGgUGCCGC--CC--UGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 9093 0.69 0.32742
Target:  5'- cGUuGCCCGCcgagGGCGGGgaacucaaucccACgCGCCCCGg -3'
miRNA:   3'- cCAuUGGGUG----CCGCCC------------UG-GCGGGGCg -5'
23317 3' -61.8 NC_005259.1 + 10132 0.66 0.499209
Target:  5'- --cAGCCCACGcGCGcGcCCGCCguUCGCa -3'
miRNA:   3'- ccaUUGGGUGC-CGCcCuGGCGG--GGCG- -5'
23317 3' -61.8 NC_005259.1 + 12016 0.66 0.470718
Target:  5'- cGGUGGCCUuguACGGUGcGGGCgGCaaCCGg -3'
miRNA:   3'- -CCAUUGGG---UGCCGC-CCUGgCGg-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.